Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000745A_C01 KMC000745A_c01
(458 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189301.1| unknown protein; protein id: At3g26670.1, suppo... 96 1e-19
ref|NP_597528.1| hypothetical protein [Encephalitozoon cuniculi]... 48 4e-05
gb|EAA22353.1| unknown protein [Plasmodium yoelii yoelii] 38 0.057
ref|NP_079035.1| hypothetical protein FLJ13955 [Homo sapiens] gi... 35 0.37
ref|NP_703570.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.4
>ref|NP_189301.1| unknown protein; protein id: At3g26670.1, supported by cDNA:
gi_20260459 [Arabidopsis thaliana]
gi|20260460|gb|AAM13128.1| unknown protein [Arabidopsis
thaliana]
Length = 441
Score = 96.3 bits (238), Expect = 1e-19
Identities = 45/51 (88%), Positives = 47/51 (91%)
Frame = -3
Query: 456 LLFLSTAGFWMTRLNEGLXLFDAILIVPMFQIAWTLFSICTGFIYFQEYLV 304
LLFLSTAGFWMTRLNEGL L+DAILIVPMFQIAWT FSICTG IYFQE+ V
Sbjct: 233 LLFLSTAGFWMTRLNEGLSLYDAILIVPMFQIAWTFFSICTGCIYFQEFQV 283
>ref|NP_597528.1| hypothetical protein [Encephalitozoon cuniculi]
gi|19168644|emb|CAD26163.1| hypothetical protein
[Encephalitozoon cuniculi]
Length = 478
Score = 48.1 bits (113), Expect = 4e-05
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Frame = -3
Query: 453 LFLSTAGFWMTR----------LNEGLXLFDAILIVPMFQIAWTLFSICTGFIYFQEY 310
+FL+T F MT LN L +DA+L++PMF + WTL SI T IYF+E+
Sbjct: 370 IFLTTYLFIMTLAICTFFQIYWLNRALRHYDALLVIPMFHVTWTLLSILTAGIYFREF 427
>gb|EAA22353.1| unknown protein [Plasmodium yoelii yoelii]
Length = 433
Score = 37.7 bits (86), Expect = 0.057
Identities = 16/36 (44%), Positives = 21/36 (57%)
Frame = -3
Query: 417 LNEGLXLFDAILIVPMFQIAWTLFSICTGFIYFQEY 310
LN GL DA L+VP + + WT F GF+ F E+
Sbjct: 295 LNLGLTRGDATLVVPTYYVFWTFFGTLGGFVKFNEF 330
>ref|NP_079035.1| hypothetical protein FLJ13955 [Homo sapiens]
gi|10436267|dbj|BAB14779.1| unnamed protein product
[Homo sapiens]
Length = 368
Score = 35.0 bits (79), Expect = 0.37
Identities = 14/50 (28%), Positives = 31/50 (62%)
Frame = -3
Query: 456 LLFLSTAGFWMTRLNEGLXLFDAILIVPMFQIAWTLFSICTGFIYFQEYL 307
++ +++ F + LN+ L++ +VP+ I +T+ +I G I++QE+L
Sbjct: 253 IIMIASCVFQVKFLNQATKLYNTTTVVPVNHIFFTISAIIAGIIFYQEFL 302
>ref|NP_703570.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504712|emb|CAD51590.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 483
Score = 33.1 bits (74), Expect = 1.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 417 LNEGLXLFDAILIVPMFQIAWTLFSICTGFIYFQE 313
LN GL +A L+VP + + WT F G + F E
Sbjct: 292 LNVGLTRGEATLVVPTYYVFWTFFGTLGGLVKFNE 326
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,606,289
Number of Sequences: 1393205
Number of extensions: 7090193
Number of successful extensions: 13267
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 12984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13264
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
