Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000741A_C01 KMC000741A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_172440.1| similar to hematopoietic-specific IL-2 deubiqui... 33 1.4
ref|NP_705165.1| hypothetical malaria antigen [Plasmodium falcip... 33 2.4
ref|NP_125918.1| Glucosamine--fructose-6-phosphate aminotransfer... 33 2.4
sp|P59158|S123_MOUSE Solute carrier family 12 member 3 (Thiazide... 32 3.1
sp|P55018|S123_RAT Solute carrier family 12 member 3 (Thiazide-s... 32 3.1
>ref|XP_172440.1| similar to hematopoietic-specific IL-2 deubiquitinating enzyme [Mus
musculus] [Homo sapiens]
Length = 489
Score = 33.5 bits (75), Expect = 1.4
Identities = 25/114 (21%), Positives = 45/114 (38%), Gaps = 13/114 (11%)
Frame = +1
Query: 124 HSRHAVHNIGNFSSFEPSTSNLN--------AQIGLFH-----GFFNPILNSNINLDRAT 264
H A+HN G+ T+ ++ +QI H F+P L+ +++ A
Sbjct: 131 HITRALHNPGHVDHHSKDTTLIHQIFGGYWRSQIKCLHCHRISDTFDPYLDIALDIQAAQ 190
Query: 265 ELYQVLNMLIFKSPLKCSTGNACSVVVSRFISSAAYKFHLSIRTIIRI*RNFXN 426
+ Q L L+ L C V + R +S H S + +I + + F +
Sbjct: 191 SVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSD 244
>ref|NP_705165.1| hypothetical malaria antigen [Plasmodium falciparum 3D7]
gi|23615410|emb|CAD52401.1| hypothetical malaria antigen
[Plasmodium falciparum 3D7]
Length = 3519
Score = 32.7 bits (73), Expect = 2.4
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 130 RHAVHNIGNFSSFEPSTSNLNAQIGLFHGFFNPILNSNINLDRA-TELYQVLNMLIFKSP 306
+H +H+I NF + E +TS LN + LF F ++ +N+ +A +L ++ M +
Sbjct: 2757 KHVLHDINNFYNNEENTSFLNVYVHLF-DIFKKSVDKMLNIIQAQKDLDKIYKMFVEIYY 2815
Query: 307 LKCSTGNACSVVVSRFISSAAYKFH 381
+K + RFI + +KFH
Sbjct: 2816 MK---------KIIRFIIFSFFKFH 2831
>ref|NP_125918.1| Glucosamine--fructose-6-phosphate aminotransferase [Pyrococcus
abyssi] gi|14548067|sp|Q9V249|GLMS_PYRAB
Glucosamine--fructose-6-phosphate aminotransferase
[isomerizing] (Hexosephosphate aminotransferase)
(D-fructose-6-phosphate amidotransferase) (GFAT)
(L-glutamine-D-fructose-6-phosphate amidotransferase)
(Glucosamine-6-phosphate synthase)
gi|7434163|pir||F75212 glutamine-fructose-6-phosphate
transaminase (isomerizing) (EC 2.6.1.16) PAB2201 -
Pyrococcus abyssi (strain Orsay)
gi|5457658|emb|CAB49149.1| glmS
Glucosamine--fructose-6-phosphate aminotransferase
[isomerizing] [Pyrococcus abyssi]
Length = 598
Score = 32.7 bits (73), Expect = 2.4
Identities = 19/55 (34%), Positives = 27/55 (48%)
Frame = +1
Query: 16 LLKKGIEKFGHLLKHNN*PLQYHR*STKIPGHVRMQHSRHAVHNIGNFSSFEPST 180
L+KKG K L K N T +PG++ + H+R A H I N ++ P T
Sbjct: 43 LIKKGAGKIDELAKRLN--------FTDLPGNIGIGHTRWATHGIPNDTNAHPHT 89
>sp|P59158|S123_MOUSE Solute carrier family 12 member 3 (Thiazide-sensitive
sodium-chloride cotransporter) (Na-Cl symporter)
gi|24047306|gb|AAH38612.1| solute carrier family 12,
member 3 [Mus musculus] gi|26342883|dbj|BAC35098.1|
unnamed protein product [Mus musculus]
Length = 1002
Score = 32.3 bits (72), Expect = 3.1
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -1
Query: 177 GWFERTEVTYIMNCMAAVLHSNMPWDFSTLTVILEWLVIM 58
GW + + ++N +L+ +PW + ++L WL+I+
Sbjct: 135 GWVKGVMIRCMLNIWGVILYLRLPWITAQAGIVLTWLIIL 174
>sp|P55018|S123_RAT Solute carrier family 12 member 3 (Thiazide-sensitive
sodium-chloride cotransporter) (Na-Cl symporter)
gi|22389599|gb|AAA21252.2| thiazide-sensitive
sodium-chloride cotransporter [Rattus norvegicus]
Length = 1002
Score = 32.3 bits (72), Expect = 3.1
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -1
Query: 177 GWFERTEVTYIMNCMAAVLHSNMPWDFSTLTVILEWLVIM 58
GW + + ++N +L+ +PW + ++L WL+I+
Sbjct: 135 GWVKGVMIRCMLNIWGVILYLRLPWITAQAGIVLTWLIIL 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,945,014
Number of Sequences: 1393205
Number of extensions: 7422773
Number of successful extensions: 13706
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 13443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13702
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
