Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000735A_C01 KMC000735A_c01
(767 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180403.1| hypothetical protein; protein id: At2g28360.1 [... 94 2e-24
gb|AAM97083.1| unknown protein [Arabidopsis thaliana] gi|2805949... 94 2e-24
ref|NP_190105.1| putative protein; protein id: At3g45190.1 [Arab... 86 3e-21
pir||A86215 protein T6D22.8 [imported] - Arabidopsis thaliana gi... 70 8e-19
ref|NP_172277.1| unknown protein; protein id: At1g07990.1 [Arabi... 70 8e-19
>ref|NP_180403.1| hypothetical protein; protein id: At2g28360.1 [Arabidopsis
thaliana] gi|25370578|pir||H84683 hypothetical protein
At2g28360 [imported] - Arabidopsis thaliana
gi|4432841|gb|AAD20690.1| hypothetical protein
[Arabidopsis thaliana]
Length = 826
Score = 94.0 bits (232), Expect(2) = 2e-24
Identities = 52/81 (64%), Positives = 59/81 (72%)
Frame = -1
Query: 749 ETVSSNGLPSTIDSMEGIVESSQRSGAVPSLFEEDVEFVGVELEGTEKAMDQALKEGIVG 570
E V N P++ +S + S S AV +LFEEDVEFVGVE EGTEKAMDQALKEGIVG
Sbjct: 724 EPVIPNSSPTSSES-SSLGHKSPSSPAVRALFEEDVEFVGVEPEGTEKAMDQALKEGIVG 782
Query: 569 EAGPLKRNMVPKVAEKENSED 507
EAGPLKRN+V KV E EN +
Sbjct: 783 EAGPLKRNIVQKVPENENQAE 803
Score = 41.2 bits (95), Expect(2) = 2e-24
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -2
Query: 499 AGVKEFNDTNYWRVDQEVAVLE 434
+GV EFND N+WRVDQEV VLE
Sbjct: 805 SGVTEFNDANFWRVDQEVTVLE 826
>gb|AAM97083.1| unknown protein [Arabidopsis thaliana] gi|28059493|gb|AAO30063.1|
unknown protein [Arabidopsis thaliana]
Length = 503
Score = 94.0 bits (232), Expect(2) = 2e-24
Identities = 52/81 (64%), Positives = 59/81 (72%)
Frame = -1
Query: 749 ETVSSNGLPSTIDSMEGIVESSQRSGAVPSLFEEDVEFVGVELEGTEKAMDQALKEGIVG 570
E V N P++ +S + S S AV +LFEEDVEFVGVE EGTEKAMDQALKEGIVG
Sbjct: 401 EPVIPNSSPTSSES-SSLGHKSPSSPAVRALFEEDVEFVGVEPEGTEKAMDQALKEGIVG 459
Query: 569 EAGPLKRNMVPKVAEKENSED 507
EAGPLKRN+V KV E EN +
Sbjct: 460 EAGPLKRNIVQKVPENENQAE 480
Score = 41.2 bits (95), Expect(2) = 2e-24
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -2
Query: 499 AGVKEFNDTNYWRVDQEVAVLE 434
+GV EFND N+WRVDQEV VLE
Sbjct: 482 SGVTEFNDANFWRVDQEVTVLE 503
>ref|NP_190105.1| putative protein; protein id: At3g45190.1 [Arabidopsis thaliana]
gi|11358005|pir||T47459 hypothetical protein T14D3.130 -
Arabidopsis thaliana gi|6911857|emb|CAB72157.1| putative
protein [Arabidopsis thaliana]
Length = 774
Score = 85.9 bits (211), Expect(2) = 3e-21
Identities = 47/74 (63%), Positives = 54/74 (72%)
Frame = -1
Query: 728 LPSTIDSMEGIVESSQRSGAVPSLFEEDVEFVGVELEGTEKAMDQALKEGIVGEAGPLKR 549
+P+ S EG E S RS VPSLF +DVEFVGVE EGTE+AMDQALKEGIVGEAGP+KR
Sbjct: 682 IPNGSSSSEG--EISPRSPPVPSLFGKDVEFVGVEPEGTERAMDQALKEGIVGEAGPMKR 739
Query: 548 NMVPKVAEKENSED 507
N KE+ +D
Sbjct: 740 NTTTASPGKESPDD 753
Score = 38.1 bits (87), Expect(2) = 3e-21
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -2
Query: 493 VKEFNDTNYWRVDQEVAVLE 434
++E+NDTNYW+VDQEV V+E
Sbjct: 755 MQEYNDTNYWKVDQEVTVVE 774
>pir||A86215 protein T6D22.8 [imported] - Arabidopsis thaliana
gi|8778825|gb|AAF79824.1|AC026875_4 T6D22.8 [Arabidopsis
thaliana]
Length = 990
Score = 69.7 bits (169), Expect(2) = 8e-19
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = -1
Query: 692 ESSQRSGAVPSLFEEDVEFVGVELEGTEKAMDQALKEGIVGEAGPLKRNMVPKVAEKENS 513
ES +G+ SLFE+DVEFVGVE EG EKAM+QA+KEGIVGEAG +K+N KE +
Sbjct: 907 ESMIPNGSERSLFEKDVEFVGVEPEGAEKAMEQAMKEGIVGEAGVMKKN-------KEMA 959
Query: 512 EDGR 501
ED +
Sbjct: 960 EDSK 963
Score = 46.2 bits (108), Expect(2) = 8e-19
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -2
Query: 514 PKTGGAGVKEFNDTNYWRVDQEVAVLE 434
P+ GVKEFND NYW+VDQEV VLE
Sbjct: 964 PEESSGGVKEFNDNNYWKVDQEVGVLE 990
>ref|NP_172277.1| unknown protein; protein id: At1g07990.1 [Arabidopsis thaliana]
Length = 882
Score = 69.7 bits (169), Expect(2) = 8e-19
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = -1
Query: 692 ESSQRSGAVPSLFEEDVEFVGVELEGTEKAMDQALKEGIVGEAGPLKRNMVPKVAEKENS 513
ES +G+ SLFE+DVEFVGVE EG EKAM+QA+KEGIVGEAG +K+N KE +
Sbjct: 799 ESMIPNGSERSLFEKDVEFVGVEPEGAEKAMEQAMKEGIVGEAGVMKKN-------KEMA 851
Query: 512 EDGR 501
ED +
Sbjct: 852 EDSK 855
Score = 46.2 bits (108), Expect(2) = 8e-19
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -2
Query: 514 PKTGGAGVKEFNDTNYWRVDQEVAVLE 434
P+ GVKEFND NYW+VDQEV VLE
Sbjct: 856 PEESSGGVKEFNDNNYWKVDQEVGVLE 882
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 655,428,643
Number of Sequences: 1393205
Number of extensions: 14513026
Number of successful extensions: 37913
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 35521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37763
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
