Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000734A_C01 KMC000734A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC49399.1| IAP100 117 8e-26
pir||S71750 import intermediate-associated 100K protein precurso... 117 8e-26
gb|AAM20701.1| chloroplast inner envelope protein, putative [Ara... 90 2e-17
ref|NP_172176.1| chloroplast inner envelope protein, putative; p... 90 2e-17
gb|AAF63131.1|AC011001_1 Putative chloroplast inner envelope pro... 90 2e-17
>gb|AAC49399.1| IAP100
Length = 996
Score = 117 bits (293), Expect = 8e-26
Identities = 57/72 (79%), Positives = 64/72 (88%)
Frame = -2
Query: 528 LACDKPVPSEKLSWEVPEELSDLYSVYFKSDPTPEKLSRLPYLLGINDSPAASLRESGDR 349
LACDK VPS+ LSWEV EELSDLY++Y KSDP+PEKLSRL YLLGINDS AA+LR+S D
Sbjct: 925 LACDKAVPSQTLSWEVSEELSDLYTIYLKSDPSPEKLSRLQYLLGINDSTAAALRDSEDS 984
Query: 348 LLETAEEEEFVF 313
LLETAEEE+FVF
Sbjct: 985 LLETAEEEKFVF 996
>pir||S71750 import intermediate-associated 100K protein precursor - garden pea
gi|1495768|emb|CAA92823.1| chloroplast inner envelope
protein, 110 kD (IEP110) [Pisum sativum]
Length = 996
Score = 117 bits (293), Expect = 8e-26
Identities = 57/72 (79%), Positives = 64/72 (88%)
Frame = -2
Query: 528 LACDKPVPSEKLSWEVPEELSDLYSVYFKSDPTPEKLSRLPYLLGINDSPAASLRESGDR 349
LACDK VPS+ LSWEV EELSDLY++Y KSDP+PEKLSRL YLLGINDS AA+LR+S D
Sbjct: 925 LACDKAVPSQTLSWEVSEELSDLYTIYLKSDPSPEKLSRLQYLLGINDSTAAALRDSEDS 984
Query: 348 LLETAEEEEFVF 313
LLETAEEE+FVF
Sbjct: 985 LLETAEEEKFVF 996
>gb|AAM20701.1| chloroplast inner envelope protein, putative [Arabidopsis thaliana]
Length = 1016
Score = 89.7 bits (221), Expect = 2e-17
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Frame = -2
Query: 528 LACDKPVPSEKLSWEVPEELSDLYSVYFKSD--PTPEKLSRLPYLLGINDSPAASLRESG 355
LACDK VP+E +SWEV EELSDLY++Y KSD P PEK+ RL YLLGI+DS A +LRE
Sbjct: 942 LACDKAVPAEPMSWEVSEELSDLYAIYSKSDPKPAPEKVLRLQYLLGIDDSTATALREME 1001
Query: 354 DRLLETAEEE-EFVF 313
D L +A EE FVF
Sbjct: 1002 DGALSSAAEEGNFVF 1016
>ref|NP_172176.1| chloroplast inner envelope protein, putative; protein id: At1g06950.1
[Arabidopsis thaliana] gi|20453114|gb|AAM19799.1|
At1g06940/F4H5_1 [Arabidopsis thaliana]
Length = 1016
Score = 89.7 bits (221), Expect = 2e-17
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Frame = -2
Query: 528 LACDKPVPSEKLSWEVPEELSDLYSVYFKSD--PTPEKLSRLPYLLGINDSPAASLRESG 355
LACDK VP+E +SWEV EELSDLY++Y KSD P PEK+ RL YLLGI+DS A +LRE
Sbjct: 942 LACDKAVPAEPMSWEVSEELSDLYAIYSKSDPKPAPEKVLRLQYLLGIDDSTATALREME 1001
Query: 354 DRLLETAEEE-EFVF 313
D L +A EE FVF
Sbjct: 1002 DGALSSAAEEGNFVF 1016
>gb|AAF63131.1|AC011001_1 Putative chloroplast inner envelope protein [Arabidopsis thaliana]
Length = 860
Score = 89.7 bits (221), Expect = 2e-17
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Frame = -2
Query: 528 LACDKPVPSEKLSWEVPEELSDLYSVYFKSD--PTPEKLSRLPYLLGINDSPAASLRESG 355
LACDK VP+E +SWEV EELSDLY++Y KSD P PEK+ RL YLLGI+DS A +LRE
Sbjct: 786 LACDKAVPAEPMSWEVSEELSDLYAIYSKSDPKPAPEKVLRLQYLLGIDDSTATALREME 845
Query: 354 DRLLETAEEE-EFVF 313
D L +A EE FVF
Sbjct: 846 DGALSSAAEEGNFVF 860
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,113,820
Number of Sequences: 1393205
Number of extensions: 10045724
Number of successful extensions: 24318
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24297
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
