Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000731A_C01 KMC000731A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P24095|LOXX_SOYBN Seed lipoxygenase gi|99932|pir||S13381 lipo... 249 2e-65
gb|AAA03728.1| lipoxygenase 249 2e-65
pir||T06827 lipoxygenase (EC 1.13.11.12) - garden pea gi|2459611... 249 2e-65
sp|P27480|LOXA_PHAVU Lipoxygenase 1 gi|100005|pir||S22153 lipoxy... 248 3e-65
pir||T11852 lipoxygenase (EC 1.13.11.12) - kidney bean gi|446418... 248 3e-65
>sp|P24095|LOXX_SOYBN Seed lipoxygenase gi|99932|pir||S13381 lipoxygenase (EC 1.13.11.12)
- soybean gi|18746|emb|CAA39604.1| lipoxygenase [Glycine
max]
Length = 864
Score = 249 bits (636), Expect = 2e-65
Identities = 117/174 (67%), Positives = 140/174 (80%)
Frame = +1
Query: 49 GIFDKSQKIKGTVVLMPKNVLDFNALTSIPKGGIPGIAGNIFGLATDAAGKVVDFSTAIL 228
GIFDK QKIKGTVVLMPKNVLDFNA+TSI KGG+ A I G G V+D +T+ L
Sbjct: 3 GIFDKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFL 62
Query: 229 SRSVAIQLISATKTDASGKGKVGNLTYVDKHIPSLPTLGARQEAYSVSFDYDADFGIPGA 408
R++++QLISAT+TD SG GKVG Y++KH+P+LPTLGARQ+A+S+ F++DA FGIPGA
Sbjct: 63 GRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGA 122
Query: 409 FYFKNFTQDEFFFVSLTLEDIPNHGTIHFVCNSWVYNAKNYKKDRIFFTNDAYL 570
FY KNF DEFF VS+ LEDIPNHGTI FVCNSWVYN ++YKK+RIFF ND YL
Sbjct: 123 FYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYL 176
>gb|AAA03728.1| lipoxygenase
Length = 864
Score = 249 bits (636), Expect = 2e-65
Identities = 117/174 (67%), Positives = 140/174 (80%)
Frame = +1
Query: 49 GIFDKSQKIKGTVVLMPKNVLDFNALTSIPKGGIPGIAGNIFGLATDAAGKVVDFSTAIL 228
GIFDK QKIKGTVVLMPKNVLDFNA+TSI KGG+ A I G G V+D +T+ L
Sbjct: 3 GIFDKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFL 62
Query: 229 SRSVAIQLISATKTDASGKGKVGNLTYVDKHIPSLPTLGARQEAYSVSFDYDADFGIPGA 408
R++++QLISAT+TD SG GKVG Y++KH+P+LPTLGARQ+A+S+ F++DA FGIPGA
Sbjct: 63 GRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGA 122
Query: 409 FYFKNFTQDEFFFVSLTLEDIPNHGTIHFVCNSWVYNAKNYKKDRIFFTNDAYL 570
FY KNF DEFF VS+ LEDIPNHGTI FVCNSWVYN ++YKK+RIFF ND YL
Sbjct: 123 FYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYL 176
>pir||T06827 lipoxygenase (EC 1.13.11.12) - garden pea gi|2459611|gb|AAB71759.1|
lipoxygenase [Pisum sativum]
Length = 868
Score = 249 bits (635), Expect = 2e-65
Identities = 117/174 (67%), Positives = 142/174 (81%)
Frame = +1
Query: 49 GIFDKSQKIKGTVVLMPKNVLDFNALTSIPKGGIPGIAGNIFGLATDAAGKVVDFSTAIL 228
GIFDK QKIKGTVVLMPKNVLDFNA+TSI KG + AGN+ G T G +D +TA L
Sbjct: 7 GIFDKGQKIKGTVVLMPKNVLDFNAITSIGKGDVFDAAGNLVGGLTSIVGGAIDTATAFL 66
Query: 229 SRSVAIQLISATKTDASGKGKVGNLTYVDKHIPSLPTLGARQEAYSVSFDYDADFGIPGA 408
R+V++QLISATKTDASGKG VG T++ H+P LPTLGARQ+A+S+ F+YDA+FGIPGA
Sbjct: 67 GRNVSMQLISATKTDASGKGLVGKETFLSNHLPQLPTLGARQDAFSIFFEYDANFGIPGA 126
Query: 409 FYFKNFTQDEFFFVSLTLEDIPNHGTIHFVCNSWVYNAKNYKKDRIFFTNDAYL 570
FY +N+T EFF VS+TLEDIPN G++ FVCNSW+YN K+Y+K+RIFFTND YL
Sbjct: 127 FYIRNYTSAEFFLVSVTLEDIPNRGSVQFVCNSWIYNFKSYQKNRIFFTNDTYL 180
>sp|P27480|LOXA_PHAVU Lipoxygenase 1 gi|100005|pir||S22153 lipoxygenase (EC 1.13.11.12) -
kidney bean gi|21017|emb|CAA45088.1| lipoxygenase
[Phaseolus vulgaris]
Length = 862
Score = 248 bits (634), Expect = 3e-65
Identities = 118/174 (67%), Positives = 138/174 (78%)
Frame = +1
Query: 49 GIFDKSQKIKGTVVLMPKNVLDFNALTSIPKGGIPGIAGNIFGLATDAAGKVVDFSTAIL 228
GI ++ KIKGTVVLM KNV DFN S +GGI G AG +FG ATD G +VD +TAI
Sbjct: 3 GILNRGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIF 62
Query: 229 SRSVAIQLISATKTDASGKGKVGNLTYVDKHIPSLPTLGARQEAYSVSFDYDADFGIPGA 408
SR++AIQLISATKTD G GKVG T+++KH+PSLP LG RQ+A++V F++D +FGIP A
Sbjct: 63 SRNIAIQLISATKTDGLGNGKVGKQTFLEKHLPSLPNLGDRQDAFNVYFEWDENFGIPEA 122
Query: 409 FYFKNFTQDEFFFVSLTLEDIPNHGTIHFVCNSWVYNAKNYKKDRIFFTNDAYL 570
FY KNF Q EFF VSLTLEDIPNHGTIHFVCNSWVYNAK+YK+DRIFF N YL
Sbjct: 123 FYIKNFMQSEFFLVSLTLEDIPNHGTIHFVCNSWVYNAKSYKRDRIFFANKTYL 176
>pir||T11852 lipoxygenase (EC 1.13.11.12) - kidney bean
gi|4464185|gb|AAB18970.2| lipoxygenase [Phaseolus
vulgaris]
Length = 865
Score = 248 bits (634), Expect = 3e-65
Identities = 120/179 (67%), Positives = 140/179 (78%)
Frame = +1
Query: 34 MLGGLGIFDKSQKIKGTVVLMPKNVLDFNALTSIPKGGIPGIAGNIFGLATDAAGKVVDF 213
+LGG K KIKGTVVLM KNVLDFN + S GG+ GIAG IFG A G +VD
Sbjct: 4 ILGG----GKGHKIKGTVVLMTKNVLDFNEVVSTAGGGVLGIAGGIFGTANKVVGGIVDG 59
Query: 214 STAILSRSVAIQLISATKTDASGKGKVGNLTYVDKHIPSLPTLGARQEAYSVSFDYDADF 393
+TAI SR++A+QL+SATKTD G GKVG T+++ H+PSLPTLG RQ+A+++SF++D F
Sbjct: 60 ATAIFSRNIALQLVSATKTDGLGNGKVGKQTFLENHLPSLPTLGDRQDAFNISFEWDESF 119
Query: 394 GIPGAFYFKNFTQDEFFFVSLTLEDIPNHGTIHFVCNSWVYNAKNYKKDRIFFTNDAYL 570
GIPGAFY KNF Q EFF VSLTLEDIPNHGTIHFVCNSWVYNAKNYKKDRIFF N Y+
Sbjct: 120 GIPGAFYIKNFMQAEFFLVSLTLEDIPNHGTIHFVCNSWVYNAKNYKKDRIFFVNKTYV 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,154,767
Number of Sequences: 1393205
Number of extensions: 11898688
Number of successful extensions: 59010
Number of sequences better than 10.0: 742
Number of HSP's better than 10.0 without gapping: 46036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56047
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
