Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000727A_C01 KMC000727A_c01
(751 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08875|SUHW_DROAN SUPPRESSOR OF HAIRY WING PROTEIN gi|627154|... 34 1.9
gb|ZP_00023743.1| hypothetical protein [Ralstonia metallidurans] 32 7.4
ref|XP_286612.1| hypothetical protein XP_286612 [Mus musculus] 32 7.4
ref|NP_567221.1| polycomb group - like protein; protein id: At4g... 32 9.7
pir||T01503 hypothetical protein T10M13.3 - Arabidopsis thaliana... 32 9.7
>sp|Q08875|SUHW_DROAN SUPPRESSOR OF HAIRY WING PROTEIN gi|627154|pir||A48586 suppressor
of hairy wing - fruit fly (Drosophila ananassae)
gi|396668|emb|CAA80975.1| Hairy-wing protein [Drosophila
ananassae]
Length = 886
Score = 34.3 bits (77), Expect = 1.9
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 641 KRLACWISIQKCDKDGD--NRLRVCHSACQSYNLACGASLDCSD 516
++ CW +++K +KDGD + +C C+SY+ ++C D
Sbjct: 252 RKAECWKNLEKIEKDGDVLEKKDICFCCCESYDTFHLGHINCPD 295
>gb|ZP_00023743.1| hypothetical protein [Ralstonia metallidurans]
Length = 423
Score = 32.3 bits (72), Expect = 7.4
Identities = 20/68 (29%), Positives = 32/68 (46%)
Frame = -2
Query: 306 LGYCLLIQNCSENVG*G*RFGFRRGEPFVDRIRSLGKEIVESKKKKKGVKRKRRVMIVVR 127
L CL +NC G +G + +G++IV+ + + +G+KR + IV
Sbjct: 72 LDRCLTCRNCESTCPSGVTYG---------HLVDIGRKIVDDRLEAQGIKRPAKERIVRW 122
Query: 126 ALAEGLER 103
L EGL R
Sbjct: 123 VLREGLTR 130
>ref|XP_286612.1| hypothetical protein XP_286612 [Mus musculus]
Length = 162
Score = 32.3 bits (72), Expect = 7.4
Identities = 17/46 (36%), Positives = 24/46 (51%)
Frame = +2
Query: 62 DIWRKGMKQNFFSFLSRPSAKALTTIITLLFLFTPFFFFLLSTISF 199
D+W +G+ N+FSFL + LF PFF FL S++ F
Sbjct: 53 DMWDQGVTCNWFSFLFLSFPFFSFLFFSFLFFSFPFFPFLFSSLLF 98
>ref|NP_567221.1| polycomb group - like protein; protein id: At4g02020.1, supported
by cDNA: gi_15982740, supported by cDNA: gi_19699175,
supported by cDNA: gi_4185506 [Arabidopsis thaliana]
gi|25455943|pir||T52415 polycomb protein EZA1 [imported]
- Arabidopsis thaliana gi|4185507|gb|AAD09108.1| EZA1
[Arabidopsis thaliana] gi|15982741|gb|AAL09711.1|
AT4g02020/T10M13_3 [Arabidopsis thaliana]
gi|19699176|gb|AAL90954.1| AT4g02020/T10M13_3
[Arabidopsis thaliana]
Length = 856
Score = 32.0 bits (71), Expect = 9.7
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Frame = -3
Query: 608 CDKDGDNRLRVCH---SACQSYNLACGAS-------------LDCSDQTLFSNEGEGEGQ 477
C K NR R CH S C+S C A+ + C D +L GEGQ
Sbjct: 636 CSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQ 695
Query: 476 CTGSGEMKL 450
C G M+L
Sbjct: 696 C---GNMRL 701
>pir||T01503 hypothetical protein T10M13.3 - Arabidopsis thaliana
gi|3912918|gb|AAC78694.1| putative curlyleaf-like 1
homeotic protein [Arabidopsis thaliana]
gi|7268586|emb|CAB80695.1| polycomb group-like protein
[Arabidopsis thaliana]
Length = 898
Score = 32.0 bits (71), Expect = 9.7
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Frame = -3
Query: 608 CDKDGDNRLRVCH---SACQSYNLACGAS-------------LDCSDQTLFSNEGEGEGQ 477
C K NR R CH S C+S C A+ + C D +L GEGQ
Sbjct: 678 CSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQ 737
Query: 476 CTGSGEMKL 450
C G M+L
Sbjct: 738 C---GNMRL 743
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 661,483,909
Number of Sequences: 1393205
Number of extensions: 14511164
Number of successful extensions: 39762
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 36873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39533
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
