Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000726A_C01 KMC000726A_c01
(769 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50793.1|AC074309_10 hypothetical protein [Arabidopsis thal... 122 7e-27
ref|NP_174489.1| hypothetical protein; protein id: At1g32090.1 [... 122 7e-27
gb|AAG46169.1|AC018727_21 unknown protein [Oryza sativa] 116 4e-25
gb|AAL07154.1| unknown protein [Arabidopsis thaliana] 86 6e-16
ref|NP_192343.1| unknown protein; protein id: At4g04340.1, suppo... 86 6e-16
>gb|AAG50793.1|AC074309_10 hypothetical protein [Arabidopsis thaliana]
Length = 165
Score = 122 bits (305), Expect = 7e-27
Identities = 71/142 (50%), Positives = 86/142 (60%), Gaps = 15/142 (10%)
Frame = -2
Query: 768 AFHKYCQHRFEPAFRKYPLEEAMAKDLLEKTTEPDLNIKAYLADAYLHPIFRSFEVE--- 598
+FHKYC+HRFEPAFR+YPLEEAMAKD LEK TEP+LN+KA LADAYLHPIF SFE E
Sbjct: 25 SFHKYCKHRFEPAFRQYPLEEAMAKDKLEKETEPELNMKADLADAYLHPIFHSFEKEVEL 84
Query: 597 ------------EELVEVRVDKQPETQVASPTLSEPSSPSPLHDHVHQPSPPQHVNQYSH 454
EE EVRVDK ETQ +SP ++E + S H + SP H
Sbjct: 85 SSSSSSEKETHQEETPEVRVDKH-ETQSSSP-VTELGTSSHHHHVYNSTSPSSHYASAYE 142
Query: 453 YPTSPPGYYYHPPPPPHYAYQY 388
+S Y+Y+ + Y+Y
Sbjct: 143 QSSSQYEYHYNTHQYEEHEYRY 164
>ref|NP_174489.1| hypothetical protein; protein id: At1g32090.1 [Arabidopsis thaliana]
gi|25518449|pir||C86445 hypothetical protein F3C3.11
[imported] - Arabidopsis thaliana
gi|10801377|gb|AAG23449.1|AC084165_15 hypothetical
protein [Arabidopsis thaliana]
Length = 806
Score = 122 bits (305), Expect = 7e-27
Identities = 71/142 (50%), Positives = 86/142 (60%), Gaps = 15/142 (10%)
Frame = -2
Query: 768 AFHKYCQHRFEPAFRKYPLEEAMAKDLLEKTTEPDLNIKAYLADAYLHPIFRSFEVE--- 598
+FHKYC+HRFEPAFR+YPLEEAMAKD LEK TEP+LN+KA LADAYLHPIF SFE E
Sbjct: 666 SFHKYCKHRFEPAFRQYPLEEAMAKDKLEKETEPELNMKADLADAYLHPIFHSFEKEVEL 725
Query: 597 ------------EELVEVRVDKQPETQVASPTLSEPSSPSPLHDHVHQPSPPQHVNQYSH 454
EE EVRVDK ETQ +SP ++E + S H + SP H
Sbjct: 726 SSSSSSEKETHQEETPEVRVDKH-ETQSSSP-VTELGTSSHHHHVYNSTSPSSHYASAYE 783
Query: 453 YPTSPPGYYYHPPPPPHYAYQY 388
+S Y+Y+ + Y+Y
Sbjct: 784 QSSSQYEYHYNTHQYEEHEYRY 805
>gb|AAG46169.1|AC018727_21 unknown protein [Oryza sativa]
Length = 810
Score = 116 bits (290), Expect = 4e-25
Identities = 68/150 (45%), Positives = 85/150 (56%), Gaps = 20/150 (13%)
Frame = -2
Query: 765 FHKYCQHRFEPAFRKYPLEEAMAKDLLEKTTEPDLNIKAYLADAYLHPIFRSFEVE---- 598
FHKYC+ RFEPAFRKYPLEEAM KD LE+T+EP+LN+K+YL +AYLHPIF FE +
Sbjct: 662 FHKYCKSRFEPAFRKYPLEEAMEKDNLERTSEPNLNLKSYLQNAYLHPIFHMFEQQQQQE 721
Query: 597 -----EELVEVRVDKQPE---TQVASPTLSEPSSPSPLHDHVHQ-----PSPPQHVNQY- 460
EE VEVR+DK + QV SS + H + H + H +Q+
Sbjct: 722 QEQQREEKVEVRIDKAQQHHHRQVEEEEEESKSSQATTHYYHHHHEQTTTTTHHHYHQHE 781
Query: 459 --SHYPTSPPGYYYHPPPPPHYAYQYQDEP 376
SHY P P PPH+ Y Y +P
Sbjct: 782 HMSHYHMGPSD-TADSPSPPHFVYHYGVDP 810
>gb|AAL07154.1| unknown protein [Arabidopsis thaliana]
Length = 772
Score = 85.9 bits (211), Expect = 6e-16
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 11/95 (11%)
Frame = -2
Query: 765 FHKYCQHRFEPAFRKYPLEEAMAKDLLEKTTEPDLNIKAYLADAYLHPIFRSFE------ 604
FH++C+ RFEPAF +YPL+EAM KD LE+ EP+LN+K YL DAY+HP+F+ +
Sbjct: 669 FHRFCKGRFEPAFVRYPLQEAMMKDTLERAREPNLNLKGYLQDAYIHPVFKGGDNDDDGD 728
Query: 603 ----VEEELVEVRVDKQPETQVASPT-LSEPSSPS 514
+E E++ V +Q +P+ +S SSPS
Sbjct: 729 MIGKLENEVIIVPTKRQSRRNTPAPSRISGESSPS 763
>ref|NP_192343.1| unknown protein; protein id: At4g04340.1, supported by cDNA:
gi_15810532, supported by cDNA: gi_20260619 [Arabidopsis
thaliana] gi|25407261|pir||H85054 hypothetical protein
AT4g04340 [imported] - Arabidopsis thaliana
gi|4982479|gb|AAD36947.1|AF069441_7 predicted protein of
unknown function [Arabidopsis thaliana]
gi|7267191|emb|CAB77902.1| predicted protein of unknown
function [Arabidopsis thaliana]
gi|20260620|gb|AAM13208.1| unknown protein [Arabidopsis
thaliana]
Length = 772
Score = 85.9 bits (211), Expect = 6e-16
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 11/95 (11%)
Frame = -2
Query: 765 FHKYCQHRFEPAFRKYPLEEAMAKDLLEKTTEPDLNIKAYLADAYLHPIFRSFE------ 604
FH++C+ RFEPAF +YPL+EAM KD LE+ EP+LN+K YL DAY+HP+F+ +
Sbjct: 669 FHRFCKGRFEPAFVRYPLQEAMMKDTLERAREPNLNLKGYLQDAYIHPVFKGGDNDDDGD 728
Query: 603 ----VEEELVEVRVDKQPETQVASPT-LSEPSSPS 514
+E E++ V +Q +P+ +S SSPS
Sbjct: 729 MIGKLENEVIIVPTKRQSRRNTPAPSRISGESSPS 763
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 669,352,428
Number of Sequences: 1393205
Number of extensions: 16310653
Number of successful extensions: 78230
Number of sequences better than 10.0: 649
Number of HSP's better than 10.0 without gapping: 52864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67565
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
