Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000725A_C01 KMC000725A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_243503.1| hypothetical protein XP_243503 [Rattus norvegicus] 34 1.5
ref|ZP_00060727.1| hypothetical protein [Clostridium thermocellu... 33 3.3
gb|EAA28955.1| hypothetical protein [Neurospora crassa] 32 4.3
sp|P34987|GU27_RAT GUSTATORY RECEPTOR GUST27 gi|423842|pir||A467... 32 7.4
dbj|BAB78748.1| low-molecular-weight glutenin subunit group 3 ty... 31 9.7
>ref|XP_243503.1| hypothetical protein XP_243503 [Rattus norvegicus]
Length = 276
Score = 33.9 bits (76), Expect = 1.5
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +1
Query: 217 QETVHWIIQCPIMSTPHSFVQPSSAENQHTPQSSNASSRCSKKQH 351
QET + Q TPHSF+ S +E PQ S ASSR ++K+H
Sbjct: 185 QETPRCLAQEKEGKTPHSFILHSESE---LPQISKASSRVAQKKH 226
>ref|ZP_00060727.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
Length = 2547
Score = 32.7 bits (73), Expect = 3.3
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 381 PLTPPMRPPVSLDSSAAACHPMAGASLTWKVEIITLPG 494
P+ PP+ PPV+ + A +P AG ++ VE+I PG
Sbjct: 2102 PVNPPIEPPVNPPVNPPADNPSAGPVISEPVEVIPGPG 2139
>gb|EAA28955.1| hypothetical protein [Neurospora crassa]
Length = 630
Score = 32.3 bits (72), Expect = 4.3
Identities = 12/37 (32%), Positives = 20/37 (53%)
Frame = -3
Query: 412 LTGGLMGGVKGYYWAFWFKQCAASLNTCYLHCLIEEY 302
+ GG +G KG+ W FWF A ++ C + + E +
Sbjct: 228 ILGGFLGRSKGWRWVFWFALMLAGVSFCAVALMPETF 264
>sp|P34987|GU27_RAT GUSTATORY RECEPTOR GUST27 gi|423842|pir||A46750 olfactory receptor
homolog - rat gi|451213|dbj|BAA02252.1| GUST27 protein
[Rattus sp.]
Length = 312
Score = 31.6 bits (70), Expect = 7.4
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Frame = -2
Query: 266 CGVLIIGHWIIQCTVSCWGIICLTKLKFSISCTYVSFICR*VKELCIAG---YS*NNWMY 96
C +LI+ W+I VS ++ + +L FS F C + L +A + N +MY
Sbjct: 122 CALLILMFWLIMFCVSLIHVLLMNELNFSRGTEIPHFFCELAQVLKVANSDTHINNVFMY 181
Query: 95 SILPKFGLV 69
+ GL+
Sbjct: 182 VVTSLLGLI 190
>dbj|BAB78748.1| low-molecular-weight glutenin subunit group 3 type II [Triticum
aestivum]
Length = 261
Score = 31.2 bits (69), Expect = 9.7
Identities = 22/80 (27%), Positives = 36/80 (44%), Gaps = 2/80 (2%)
Frame = +1
Query: 124 AMHSSLTYLQINDTYVQLMLNLSFVKHIMPQQETVHWIIQCPIMSTPHSF--VQPSSAEN 297
A+ ++ Q+ ++++ + S + + PQQ H Q PI PH F QP S +
Sbjct: 6 AVAATSAIAQMENSHIPGLERPSQQQPLPPQQTLSHHHQQQPIQQQPHQFPQQQPCSQQQ 65
Query: 298 QHTPQSSNASSRCSKKQHIV 357
Q P S S++Q V
Sbjct: 66 QQPPLSQQQQPPFSQQQQPV 85
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,054,302
Number of Sequences: 1393205
Number of extensions: 10856087
Number of successful extensions: 28917
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28880
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
