Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000724A_C01 KMC000724A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566957.1| gamma response I protein; protein id: At3g52120... 88 7e-17
pir||T49091 gamma response I protein - Arabidopsis thaliana gi|4... 88 7e-17
pir||T02299 hypothetical protein F23858_1 - human (fragment) gi|... 64 8e-10
gb|AAH01043.1|AAH01043 Unknown (protein for MGC:1134) [Homo sapi... 64 8e-10
gb|AAH27188.1| Unknown (protein for MGC:28407) [Mus musculus] 64 8e-10
>ref|NP_566957.1| gamma response I protein; protein id: At3g52120.1, supported by
cDNA: gi_14335159, supported by cDNA: gi_20334807
[Arabidopsis thaliana] gi|14335160|gb|AAK59860.1|
AT3g52120/F4F15_230 [Arabidopsis thaliana]
gi|20334808|gb|AAM16265.1| AT3g52120/F4F15_230
[Arabidopsis thaliana]
Length = 443
Score = 87.8 bits (216), Expect = 7e-17
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = -3
Query: 508 NVKKDHLGVGAVQPGEVTSEDDIYDQYKKRMMLGYRHRPNPLNNPRKAYY 359
+VK ++LGVGA PGEV EDDIY+QYKKRMMLGY+HRPNPL NPRKAYY
Sbjct: 394 DVKTNNLGVGASAPGEVKPEDDIYEQYKKRMMLGYKHRPNPLGNPRKAYY 443
>pir||T49091 gamma response I protein - Arabidopsis thaliana
gi|4678941|emb|CAB41332.1| gamma response I protein
[Arabidopsis thaliana]
Length = 1110
Score = 87.8 bits (216), Expect = 7e-17
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = -3
Query: 508 NVKKDHLGVGAVQPGEVTSEDDIYDQYKKRMMLGYRHRPNPLNNPRKAYY 359
+VK ++LGVGA PGEV EDDIY+QYKKRMMLGY+HRPNPL NPRKAYY
Sbjct: 1061 DVKTNNLGVGASAPGEVKPEDDIYEQYKKRMMLGYKHRPNPLGNPRKAYY 1110
>pir||T02299 hypothetical protein F23858_1 - human (fragment)
gi|2988397|gb|AAC08052.1| F23858_1 [Homo sapiens]
Length = 608
Score = 64.3 bits (155), Expect = 8e-10
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3
Query: 496 DHLGVGAVQPGEVTSEDDIYDQYKKRMMLGYRHRPNPLNNPRKAYY 359
D G G +P E++ EDD Y+ ++KRMML YR RPNPLNNPR+ YY
Sbjct: 563 DGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRRPYY 608
>gb|AAH01043.1|AAH01043 Unknown (protein for MGC:1134) [Homo sapiens]
gi|12804255|gb|AAH02986.1|AAH02986 Unknown (protein for
MGC:3480) [Homo sapiens]
Length = 195
Score = 64.3 bits (155), Expect = 8e-10
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3
Query: 496 DHLGVGAVQPGEVTSEDDIYDQYKKRMMLGYRHRPNPLNNPRKAYY 359
D G G +P E++ EDD Y+ ++KRMML YR RPNPLNNPR+ YY
Sbjct: 150 DGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRRPYY 195
>gb|AAH27188.1| Unknown (protein for MGC:28407) [Mus musculus]
Length = 639
Score = 64.3 bits (155), Expect = 8e-10
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3
Query: 496 DHLGVGAVQPGEVTSEDDIYDQYKKRMMLGYRHRPNPLNNPRKAYY 359
D G G +P E++ EDD Y+ ++KRMML YR RPNPLNNPR+ YY
Sbjct: 594 DGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRRPYY 639
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,952,792
Number of Sequences: 1393205
Number of extensions: 9350816
Number of successful extensions: 23118
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 22525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23113
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
