Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000721A_C02 KMC000721A_c02
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB32902.1| putative heat-shock protein [Oryza sativa (japon... 37 0.14
ref|NP_373026.1| fibronectin-binding protein homolog [Staphyloco... 37 0.23
gb|AAD39458.1|AF133696_1 putative surface-exposed virulence prot... 35 0.88
pir||T31433 Na+/Ca2+,K+-exchanging protein - bottle-nosed dolphi... 35 0.88
gb|EAA05275.1| ebiP8371 [Anopheles gambiae str. PEST] 35 0.88
>dbj|BAB32902.1| putative heat-shock protein [Oryza sativa (japonica
cultivar-group)] gi|13161454|dbj|BAB33024.1| putative
heat-shock protein [Oryza sativa (japonica
cultivar-group)]
Length = 845
Score = 37.4 bits (85), Expect = 0.14
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -2
Query: 577 TPPTPPSQGGEQ---QQPQGDANANTHENGGDNGNQVPPASSEPMETDKPENS 428
TPPT GG Q QQPQG A GG + ++ E METDKPE +
Sbjct: 795 TPPTETPAGGAQTPEQQPQGAEAAGEASEGGAS-----ESTGEQMETDKPEGT 842
>ref|NP_373026.1| fibronectin-binding protein homolog [Staphylococcus aureus subsp.
aureus Mu50] gi|15928081|ref|NP_375614.1|
fibronectin-binding protein homolog [Staphylococcus
aureus subsp. aureus N315] gi|25507711|pir||G90053
hypothetical protein fnbB [imported] - Staphylococcus
aureus (strain N315) gi|13702452|dbj|BAB43593.1| fnbB
[Staphylococcus aureus subsp. aureus N315]
gi|14248276|dbj|BAB58664.1| fibronectin-binding protein
homolog [Staphylococcus aureus subsp. aureus Mu50]
Length = 961
Score = 36.6 bits (83), Expect = 0.23
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Frame = -2
Query: 577 TPPTP--PSQGGEQQQPQGDANAN-------THENGGDNGNQVPPASSEPMETDKPENSG 425
TPPTP PS+ GE P+ + + T E + G VPPA EP + KP G
Sbjct: 837 TPPTPEVPSEPGEPTPPKPEVPSEPETPVPPTPEVPSEPGKPVPPAKEEPKKPSKPVEQG 896
>gb|AAD39458.1|AF133696_1 putative surface-exposed virulence protein BigA [Salmonella
typhimurium]
Length = 1963
Score = 34.7 bits (78), Expect = 0.88
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 568 TPPSQGGEQQQPQGDANANTHENGGDNGNQVPPASSEPMETDKPENSG 425
TPP GG P N ++GGD+ N PP S + P++SG
Sbjct: 108 TPPDDGGNVTPPDDGGNVTPPDDGGDD-NVTPPDDSGDDDVAPPDDSG 154
>pir||T31433 Na+/Ca2+,K+-exchanging protein - bottle-nosed dolphin
gi|3170603|gb|AAC18119.1| retinal rod Na/Ca+K exchanger
[Tursiops truncatus]
Length = 1014
Score = 34.7 bits (78), Expect = 0.88
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = -3
Query: 549 VSSSNLRGMLMPTLMRMEGITVIRSHQLL-LNQWRLISQRTQALPNLFMLVCSHLKFMLD 373
V + G + ++ + G + S ++L L W L T + +L ML+ L ++
Sbjct: 519 VGIGTIVGSAVFNILFVIGTCALFSREILNLTWWPLFRDITFYILDLMMLILFFLDSLIV 578
Query: 372 WWVVYMYYLV**SYQFSLAWKKLFWFWAGSQ 280
WW + L Y F++ W K W Q
Sbjct: 579 WWESLLLLLAYALYVFTMKWNKQLELWVKKQ 609
>gb|EAA05275.1| ebiP8371 [Anopheles gambiae str. PEST]
Length = 1371
Score = 34.7 bits (78), Expect = 0.88
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -2
Query: 574 PPTPPSQGG-EQQQPQGDANANTHENGGDNGNQV---PPASSEPME 449
PP P +Q G +QQQP N+N H+NG D + PA S+ E
Sbjct: 970 PPPPMAQTGKQQQQPASVGNSNAHDNGADGDVSIYHPRPAISQDAE 1015
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,488,360
Number of Sequences: 1393205
Number of extensions: 12232516
Number of successful extensions: 37716
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 33302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37271
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
