Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000720A_C01 KMC000720A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200884.1| putative protein; protein id: At5g60760.1 [Arab... 59 4e-08
dbj|BAB10097.1| emb|CAB72147.1~gene_id:MAE1.1~strong similarity ... 59 4e-08
pir||T47449 hypothetical protein T14D3.30 - Arabidopsis thaliana... 56 2e-07
ref|NP_566873.1| putative protein; protein id: At3g45090.1, supp... 56 2e-07
gb|EAA31881.1| hypothetical protein ( (AL513466) conserved hypot... 34 0.78
>ref|NP_200884.1| putative protein; protein id: At5g60760.1 [Arabidopsis thaliana]
Length = 749
Score = 58.5 bits (140), Expect = 4e-08
Identities = 35/77 (45%), Positives = 47/77 (60%)
Frame = -1
Query: 463 NKYRENLDLFLRTRSEPMTMGVASPEPPCSYSSLLMEKSERKLTPAGRAKLRKRSLSIPA 284
+KY +NLDLFLRT ++ + EP +SLL ++ G+ K+RKRSLSI A
Sbjct: 679 DKYIQNLDLFLRTANQQLV------EPLQLCASLLTCENGNTRLWLGKEKMRKRSLSISA 732
Query: 283 LGKHRSAINDPILSGAP 233
+GKH S + D IL GAP
Sbjct: 733 IGKHGSGLGDAILLGAP 749
>dbj|BAB10097.1| emb|CAB72147.1~gene_id:MAE1.1~strong similarity to unknown protein
[Arabidopsis thaliana] gi|27754621|gb|AAO22756.1|
unknown protein [Arabidopsis thaliana]
gi|28393929|gb|AAO42372.1| unknown protein [Arabidopsis
thaliana]
Length = 738
Score = 58.5 bits (140), Expect = 4e-08
Identities = 35/77 (45%), Positives = 47/77 (60%)
Frame = -1
Query: 463 NKYRENLDLFLRTRSEPMTMGVASPEPPCSYSSLLMEKSERKLTPAGRAKLRKRSLSIPA 284
+KY +NLDLFLRT ++ + EP +SLL ++ G+ K+RKRSLSI A
Sbjct: 668 DKYIQNLDLFLRTANQQLV------EPLQLCASLLTCENGNTRLWLGKEKMRKRSLSISA 721
Query: 283 LGKHRSAINDPILSGAP 233
+GKH S + D IL GAP
Sbjct: 722 IGKHGSGLGDAILLGAP 738
>pir||T47449 hypothetical protein T14D3.30 - Arabidopsis thaliana
gi|6911847|emb|CAB72147.1| putative protein [Arabidopsis
thaliana]
Length = 716
Score = 55.8 bits (133), Expect = 2e-07
Identities = 32/74 (43%), Positives = 47/74 (63%)
Frame = -1
Query: 463 NKYRENLDLFLRTRSEPMTMGVASPEPPCSYSSLLMEKSERKLTPAGRAKLRKRSLSIPA 284
+KY +NLDLFL+T ++P+T S E Y ++ + + +AK+RKRSLSIP
Sbjct: 645 DKYSQNLDLFLKTTNQPLT---ESLELTSEY------RNRMGVAASDKAKMRKRSLSIPP 695
Query: 283 LGKHRSAINDPILS 242
+GKH S I+D IL+
Sbjct: 696 VGKHGSIIDDQILA 709
>ref|NP_566873.1| putative protein; protein id: At3g45090.1, supported by cDNA:
gi_15810518, supported by cDNA: gi_20465686 [Arabidopsis
thaliana] gi|15810519|gb|AAL07147.1| unknown protein
[Arabidopsis thaliana] gi|20465687|gb|AAM20312.1|
unknown protein [Arabidopsis thaliana]
Length = 717
Score = 55.8 bits (133), Expect = 2e-07
Identities = 32/74 (43%), Positives = 47/74 (63%)
Frame = -1
Query: 463 NKYRENLDLFLRTRSEPMTMGVASPEPPCSYSSLLMEKSERKLTPAGRAKLRKRSLSIPA 284
+KY +NLDLFL+T ++P+T S E Y ++ + + +AK+RKRSLSIP
Sbjct: 646 DKYSQNLDLFLKTTNQPLT---ESLELTSEY------RNRMGVAASDKAKMRKRSLSIPP 696
Query: 283 LGKHRSAINDPILS 242
+GKH S I+D IL+
Sbjct: 697 VGKHGSIIDDQILA 710
>gb|EAA31881.1| hypothetical protein ( (AL513466) conserved hypothetical protein
[Neurospora crassa] )
Length = 1080
Score = 34.3 bits (77), Expect = 0.78
Identities = 24/69 (34%), Positives = 32/69 (45%), Gaps = 7/69 (10%)
Frame = -1
Query: 418 EPMTMGVASPEPPCSYSSLLMEKSERKLTPAGRAKLRKRS-------LSIPALGKHRSAI 260
E +T+G +P+P C SS L+E SER L A L +R S PA A
Sbjct: 209 EDITIGTRTPKPYCRQSSELLEPSERLLHRAATVALSQRQPSPTSAHNSNPASDSGTEAD 268
Query: 259 NDPILSGAP 233
++ L G P
Sbjct: 269 DEHFLKGLP 277
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,632,293
Number of Sequences: 1393205
Number of extensions: 7948180
Number of successful extensions: 16739
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16728
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
