KMC000718A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC000718A_C01 KMC000718A_c01
tttttttttttttttttTACCAAAAATGCAATCAAGCCTTTTTTATTCAAGCCATAGTAA
GCCAATTAGGCCCATTTTAAGAGCTATATTCACATTTAGACTCATTCCAAAACTTCCTAC
CGACATATTCTTGAGGAAGAAGACAGACCACCATACTTGGTATCGCTTTGATTCTGGAAT
TTGAATAACACTGGTTTTGGATCTTGGCGCACTAACTCCTGCATGTCGAACTAATTACCA
GGCTTGATGACTAATTACCAGGCTTGATGACGGAAAAATAGCATGCTCAAACAACTGCTG
AAAATTGGCATTCAACAAAAGGAAACACGTACCAAGAAAAAGCCATGCACTATGTTGGGA
GAGCATTAATGCAATGAAAGTCCTAGAGAAAAGATAGTCTAACAATTTTTTCCCCATGAA
AGTTCAAGATGTTTGGCAAAGATAGGTTCATTTTAACTAGCTCGAATAGCGAAGAAAATC
TAAGAATCCAAGTAGCTCTTAATTAAACGACGTTCGAACACTAATGTAATTTAAGTCTCA
AGATGCATGCGATGGAAATGACAATTTCTTACTGAGCATCAGCAGACCTGCCAAGATGTA
TTCAAAATGCTTCCATAACACTAACTAGCATGATGGCCAAAAATAAGAAAATCAGTAAAA
GCTGCCAAGGATGAATAGAAGAGTAGTCTCCTACTGCCTTGTGCTTTTTCCCTGGTGCTG
CAAGTTTGGCGGCAACTTGCTCTTCAGACAAAGGTAAATAGTAGATCCGAGGAGTGGCTG
TGGTTTAGTGCGGAAGAGATCATCCAGAGTGACAATAGGTGGGTCCACTTTCTCAGGTAG
GGGAGGTGGGGATGGCAGCCGTTCCCTTGCTACTGGCGGGGCCCTTGACAATGGTGGTGG
AGGTGGAAGAGCAACTGGAATTGGATGCTGCTCCCTTTGCTGACGAGGGGAAGGCTCTGG
CTGTGAGGAAGATGGTGCAGGAGCAACTGTTGGAACACTGACAGAGGCGGCCTGAGGAGG
AGGAGGAGGAGGAGCTTCTAACTTCATTTTCGCATCTTC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000718A_C01 KMC000718A_c01
(1059 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195678.1| hypothetical protein; protein id: At4g39680.1 [... 77 4e-20
dbj|BAC07066.1| contains EST AU062819(C50596)~similar to Arabido... 57 5e-14
pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CA... 63 9e-09
pir||T10798 pherophorin-S - Volvox carteri gi|1655699|emb|CAA690... 62 2e-08
emb|CAC43457.1| protease 1 [Pneumocystis carinii] 61 3e-08
>ref|NP_195678.1| hypothetical protein; protein id: At4g39680.1 [Arabidopsis thaliana]
gi|7487219|pir||T05005 hypothetical protein T19P19.70 -
Arabidopsis thaliana gi|3080437|emb|CAA18754.1| putative
protein [Arabidopsis thaliana] gi|7270952|emb|CAB80631.1|
putative protein [Arabidopsis thaliana]
Length = 633
Score = 76.6 bits (187), Expect(2) = 4e-20
Identities = 47/99 (47%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Frame = -1
Query: 1059 EDAKMKLEAPPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRA 880
E+ K KLEAP PP QP+ P+ Q P P ALPPPPPL++
Sbjct: 533 EEVKEKLEAPLPP-------------------QPQHQPQAQTLSRPPPTALPPPPPLAK- 572
Query: 879 PPVARERLPSPPP---LPEKVDPPIVTLDDLF-RTKPQP 775
PP ERLP PPP PE+ +PPIVTLDDLF +TK P
Sbjct: 573 PPHVVERLPLPPPPPIAPEEQEPPIVTLDDLFKKTKAIP 611
Score = 44.3 bits (103), Expect(2) = 4e-20
Identities = 22/27 (81%), Positives = 22/27 (81%)
Frame = -3
Query: 784 TTATPRIYYLPLSEEQVAAKLAAPGKK 704
T A PRIYYLPLSEEQVAAKLAA K
Sbjct: 607 TKAIPRIYYLPLSEEQVAAKLAANNNK 633
>dbj|BAC07066.1| contains EST AU062819(C50596)~similar to Arabidopsis thaliana
chromosome4, At4g39680~unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 938
Score = 56.6 bits (135), Expect(2) = 5e-14
Identities = 42/95 (44%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Frame = -1
Query: 1056 DAKMKLEAPPPPPPQAASVSVPTVAPAPSSS------QPEPSPRQQREQHPIPVALPPPP 895
+ K KLE PPPPP A ++ PT A APS P + R P P AL P
Sbjct: 820 EVKAKLEPPPPPP---APIN-PTAATAPSHQSKANQIMPPHAADTSRGLLPTPPALARLP 875
Query: 894 PLSRAPPVARERLPSPPPLPEKVDPPIVTLDDLFR 790
+ AP ARE LP P PE P +VTLDDLFR
Sbjct: 876 TFNNAP--AREMLPPAPKNPE--PPVVVTLDDLFR 906
Score = 43.9 bits (102), Expect(2) = 5e-14
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = -3
Query: 784 TTATPRIYYLPLSEEQVAAKLAAPGKKHKA 695
T A+PRIYY+P+SEE V+AKLAA GK KA
Sbjct: 908 TQASPRIYYMPVSEEVVSAKLAARGKGKKA 937
>pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CAA46283.1|
extensin [Volvox carteri]
Length = 464
Score = 62.8 bits (151), Expect = 9e-09
Identities = 33/75 (44%), Positives = 36/75 (48%)
Frame = -1
Query: 1032 PPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERLP 853
PP PPP + P+ +P P S P P P P P A PPPPP S PP R P
Sbjct: 333 PPSPPPPSPPPPRPSPSPPPPRSSPSPPPPVVSPPPPPPRASPPPPPASSPPPPPRPPPP 392
Query: 852 SPPPLPEKVDPPIVT 808
SPPP P PP T
Sbjct: 393 SPPPSP----PPPAT 403
Score = 60.8 bits (146), Expect = 3e-08
Identities = 30/77 (38%), Positives = 36/77 (45%), Gaps = 4/77 (5%)
Frame = -1
Query: 1035 APPPPPPQAASVSVPTVAPAPSSSQPEPSPR----QQREQHPIPVALPPPPPLSRAPPVA 868
+P PPPP+++ P P PS P PSP + P PV PPPPP +PP
Sbjct: 319 SPSPPPPRSSPSPPPPSPPPPSPPPPRPSPSPPPPRSSPSPPPPVVSPPPPPPRASPPPP 378
Query: 867 RERLPSPPPLPEKVDPP 817
P PPP P PP
Sbjct: 379 PASSPPPPPRPPPPSPP 395
Score = 58.2 bits (139), Expect = 2e-07
Identities = 31/72 (43%), Positives = 35/72 (48%)
Frame = -1
Query: 1035 APPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERL 856
+PPPPPP S S P P P SS P P P + P P + P PPP S PP
Sbjct: 288 SPPPPPPPRVSPSPPP--PQPVSSPPPPPPPRPSPSPPPPRSSPSPPPPSPPPPSPPPPR 345
Query: 855 PSPPPLPEKVDP 820
PSP P P + P
Sbjct: 346 PSPSPPPPRSSP 357
Score = 52.8 bits (125), Expect = 9e-06
Identities = 31/79 (39%), Positives = 34/79 (42%), Gaps = 6/79 (7%)
Frame = -1
Query: 1035 APPPPPPQAASVSVPTVAPAPSSSQPEP-SPRQQREQHPIPVALPPPPPLSRAPPVARER 859
+P PPPPQ S P P PS S P P S P P + PPP P PP
Sbjct: 298 SPSPPPPQPVSSPPPPPPPRPSPSPPPPRSSPSPPPPSPPPPSPPPPRPSPSPPPPRSSP 357
Query: 858 LP-----SPPPLPEKVDPP 817
P SPPP P + PP
Sbjct: 358 SPPPPVVSPPPPPPRASPP 376
Score = 52.4 bits (124), Expect = 1e-05
Identities = 30/74 (40%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -1
Query: 1029 PPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSR---APPVARER 859
PPPPP+ P VA P P SP Q PV+ PPPPP R +PP R
Sbjct: 272 PPPPPRVPPSPPPPVASPPPPPPPRVSPSPPPPQ---PVSSPPPPPPPRPSPSPPPPRSS 328
Query: 858 LPSPPPLPEKVDPP 817
PPP P PP
Sbjct: 329 PSPPPPSPPPPSPP 342
Score = 50.8 bits (120), Expect = 3e-05
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = -1
Query: 1035 APPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRA----PPVA 868
+PPPPPP+A+ P +P P P PSP A PP P SR+ PP+
Sbjct: 365 SPPPPPPRASPPPPPASSPPPPPRPPPPSPPPSPPPPATAAANPPSPAPSRSRAGGPPLG 424
Query: 867 RERLPSPPPLPEKVDPP 817
P PPP + PP
Sbjct: 425 TR--PPPPPPEDDAPPP 439
Score = 50.8 bits (120), Expect = 3e-05
Identities = 33/83 (39%), Positives = 37/83 (43%), Gaps = 8/83 (9%)
Frame = -1
Query: 1032 PPPPPPQAASVSVPTVAPAPSSSQP---EPSPRQQREQHPIPVALPP-----PPPLSRAP 877
P PPPP S S P A SS P P PR+ P+ A PP PPP R P
Sbjct: 220 PSPPPPPRVSTSPPPPARVSSSPPPATRSPPPRRITSPSPVLTASPPLPKTSPPPPPRVP 279
Query: 876 PVARERLPSPPPLPEKVDPPIVT 808
P + SPPP P PP V+
Sbjct: 280 PSPPPPVASPPPPP----PPRVS 298
Score = 47.0 bits (110), Expect = 5e-04
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Frame = -1
Query: 1035 APPP----PPPQAASVSVP--TVAPAPSSSQPEPSPRQQREQHPIPVALPPPPP---LSR 883
+PPP PPP+ + P T +P + P P PR P PVA PPPPP +S
Sbjct: 241 SPPPATRSPPPRRITSPSPVLTASPPLPKTSPPPPPRVPPSPPP-PVASPPPPPPPRVSP 299
Query: 882 APPVARERLPSPPPLPEKVDP 820
+PP + PPP P + P
Sbjct: 300 SPPPPQPVSSPPPPPPPRPSP 320
Score = 46.6 bits (109), Expect = 7e-04
Identities = 28/76 (36%), Positives = 33/76 (42%), Gaps = 2/76 (2%)
Frame = -1
Query: 1029 PPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPP-VARERLP 853
PPPP + S P V+P P + P P P P PP PP S PP A P
Sbjct: 350 PPPPRSSPSPPPPVVSPPPPPPRASPPPPPASSPPPPPRPPPPSPPPSPPPPATAAANPP 409
Query: 852 SPPPLPEKV-DPPIVT 808
SP P + PP+ T
Sbjct: 410 SPAPSRSRAGGPPLGT 425
Score = 45.8 bits (107), Expect = 0.001
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -1
Query: 1044 KLEAPPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPL---SRAPP 874
++ PPPP + +S P P PSP P+P PPPPP S PP
Sbjct: 227 RVSTSPPPPARVSSSPPPATRSPPPRRITSPSP-VLTASPPLPKTSPPPPPRVPPSPPPP 285
Query: 873 VARERLPSPPPLPEKVDPP 817
VA P PP + PP
Sbjct: 286 VASPPPPPPPRVSPSPPPP 304
Score = 43.9 bits (102), Expect = 0.004
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = -1
Query: 1029 PPPPPQAASVSVPTVAPAPSSSQ---PEPSPRQQREQHPIPVALPPPPPLSRAPPVARER 859
PPPPP+ S P P P+++ P P+P + R P PPPPP P
Sbjct: 383 PPPPPRPPPPSPPPSPPPPATAAANPPSPAPSRSRAGGPPLGTRPPPPPPEDDAPPPDYY 442
Query: 858 LPSP----PPLPEK 829
P P PP P+K
Sbjct: 443 FPPPQDMSPPPPKK 456
Score = 41.2 bits (95), Expect = 0.028
Identities = 27/73 (36%), Positives = 33/73 (44%), Gaps = 4/73 (5%)
Frame = -1
Query: 1035 APPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERL 856
+PPP PP A+ + +PAPS S+ P R PPPPP APP
Sbjct: 393 SPPPSPPPPATAAANPPSPAPSRSRAGGPPLGTRP--------PPPPPEDDAPPPDYYFP 444
Query: 855 P----SPPPLPEK 829
P SPPP +K
Sbjct: 445 PPQDMSPPPPKKK 457
Score = 40.8 bits (94), Expect = 0.036
Identities = 31/83 (37%), Positives = 35/83 (41%), Gaps = 12/83 (14%)
Frame = -1
Query: 1029 PPPPPQAASVSVPTVA-PAPSSSQPEPSPRQQREQHPIPVALPPPP------PLSRAPPV 871
PPPP + P + P P +S P P P R P P PPPP P S AP
Sbjct: 359 PPPPVVSPPPPPPRASPPPPPASSPPPPP---RPPPPSPPPSPPPPATAAANPPSPAPSR 415
Query: 870 ARERLP-----SPPPLPEKVDPP 817
+R P PPP PE PP
Sbjct: 416 SRAGGPPLGTRPPPPPPEDDAPP 438
Score = 40.4 bits (93), Expect = 0.047
Identities = 25/70 (35%), Positives = 33/70 (46%), Gaps = 7/70 (10%)
Frame = -1
Query: 1005 SVSVPTVAPAPSSSQPEPSPRQQREQHPIPVAL--PPPPPLSRAPPVARERLPSP----- 847
+V++ T A + P P P + P P A PPP +R+PP R PSP
Sbjct: 205 TVALVTAAAVVVQTTPSPPPPPRVSTSPPPPARVSSSPPPATRSPPPRRITSPSPVLTAS 264
Query: 846 PPLPEKVDPP 817
PPLP+ PP
Sbjct: 265 PPLPKTSPPP 274
Score = 36.2 bits (82), Expect = 0.89
Identities = 20/63 (31%), Positives = 29/63 (45%), Gaps = 12/63 (19%)
Frame = -1
Query: 1032 PPPPPPQAASVSVPTVAPA-------PSSSQPEPSPRQQREQ-----HPIPVALPPPPPL 889
P PPPP A+ + P+ AP+ P ++P P P + P P + PPPP
Sbjct: 396 PSPPPPATAAANPPSPAPSRSRAGGPPLGTRPPPPPPEDDAPPPDYYFPPPQDMSPPPPK 455
Query: 888 SRA 880
+A
Sbjct: 456 KKA 458
>pir||T10798 pherophorin-S - Volvox carteri gi|1655699|emb|CAA69032.1|
pherophorin-S [Volvox carteri]
Length = 599
Score = 62.0 bits (149), Expect = 2e-08
Identities = 35/102 (34%), Positives = 39/102 (37%)
Frame = -1
Query: 1032 PPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERLP 853
PPPPPP P P P S P P P P P PPPPP PP P
Sbjct: 227 PPPPPPSPPPSPPPPPPPPPPSPPPSPPPPPPPPPPPPPPPPPPPPPPPSPPPPPPPPPP 286
Query: 852 SPPPLPEKVDPPIVTLDDLFRTKPQPLLGSTIYLCLKSKLPP 727
PPP P PP P P+ +C+ +KL P
Sbjct: 287 PPPPPPPPPPPP----------PPPPVYPDQCSVCIVAKLQP 318
Score = 50.1 bits (118), Expect = 6e-05
Identities = 30/73 (41%), Positives = 32/73 (43%)
Frame = -1
Query: 1035 APPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERL 856
+PPPPPP + S P P P S P PSP P PPPPP PP
Sbjct: 225 SPPPPPPPSPPPSPPPPPPPPPPSPP-PSP---------PPPPPPPPPPPPPPP------ 268
Query: 855 PSPPPLPEKVDPP 817
P PPP P PP
Sbjct: 269 PPPPPPPSPPPPP 281
Score = 45.8 bits (107), Expect = 0.001
Identities = 26/69 (37%), Positives = 31/69 (44%)
Frame = -1
Query: 1023 PPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERLPSPP 844
P QA+++ +P PS P P P P P PPPPP S PP + P PP
Sbjct: 203 PISQASTLPLPLPNAPPSPLPPSPPPPPPPSPPPSPPPPPPPPPPS--PPPSPPPPPPPP 260
Query: 843 PLPEKVDPP 817
P P PP
Sbjct: 261 PPPPPPPPP 269
Score = 45.4 bits (106), Expect = 0.001
Identities = 27/71 (38%), Positives = 28/71 (39%)
Frame = -1
Query: 1029 PPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERLPS 850
P P P A +P P P P PSP P P PP PP S PP P
Sbjct: 211 PLPLPNAPPSPLPPSPPPPPPPSPPPSPP------PPPPPPPPSPPPSPPPPPPPPPPPP 264
Query: 849 PPPLPEKVDPP 817
PPP P PP
Sbjct: 265 PPPPPPPPPPP 275
Score = 36.6 bits (83), Expect = 0.68
Identities = 26/76 (34%), Positives = 31/76 (40%)
Frame = -1
Query: 1044 KLEAPPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVAR 865
+L PPP P A A + E P Q P+P+ PP PL +PP
Sbjct: 177 QLCTPPPGYPSGFC------AAAIFDTTCECCPISQASTLPLPLPNAPPSPLPPSPPPPP 230
Query: 864 ERLPSPPPLPEKVDPP 817
PSPPP P PP
Sbjct: 231 P--PSPPPSPPPPPPP 244
>emb|CAC43457.1| protease 1 [Pneumocystis carinii]
Length = 938
Score = 60.8 bits (146), Expect = 3e-08
Identities = 30/72 (41%), Positives = 34/72 (46%)
Frame = -1
Query: 1032 PPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERLP 853
PPPP P P APAP P P PR + E P PV PP P PP + P
Sbjct: 782 PPPPSPPPPPPPPPAPAPAPPPPPPPPPPRPELEPEPEPVPQPPQP----QPPQPQPEPP 837
Query: 852 SPPPLPEKVDPP 817
+PPP P+ PP
Sbjct: 838 APPPKPQPPQPP 849
Score = 54.7 bits (130), Expect = 2e-06
Identities = 30/80 (37%), Positives = 37/80 (45%), Gaps = 5/80 (6%)
Frame = -1
Query: 1032 PPPPPPQAASVSVPTVAPAPS-----SSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVA 868
PPPPPP A + + P P P +PEP P+ + Q P P PP PP PP
Sbjct: 789 PPPPPPPAPAPAPPPPPPPPPPRPELEPEPEPVPQPPQPQPPQPQPEPPAPPPKPQPP-- 846
Query: 867 RERLPSPPPLPEKVDPPIVT 808
P PPP P + P +T
Sbjct: 847 ---QPPPPPPPPEQKPTSIT 863
Score = 44.7 bits (104), Expect = 0.002
Identities = 37/115 (32%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Frame = -1
Query: 1032 PPPPPPQAASVSVPTVAPA--PSS-----------SQPEPSPRQQREQHPIPVALPPPPP 892
PPPP PQ P P PSS SQP P Q P P + P P P
Sbjct: 671 PPPPAPQPQPQPQPQPDPGSLPSSDPESPPSSEPGSQPPSKPGPQPPSDPQPPSKPGPQP 730
Query: 891 LSRAPPVARERLPSPPPLPEKVDPPIVTLDDLFRTKPQPLLGSTIYLCLKSKLPP 727
S P ++ PS P P K DP + D + P L S S+ PP
Sbjct: 731 PSEPAPPSKPAPPSKPAPPSKPDPN-PSSDPSSQKDPDTSLSSNPTSTSSSEPPP 784
Score = 43.9 bits (102), Expect = 0.004
Identities = 33/89 (37%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = -1
Query: 1035 APPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAP-PVARER 859
+PPPPPP P APAP+ P P P PP P L P PV +
Sbjct: 786 SPPPPPP-------PPPAPAPAPPPPPPPP-------------PPRPELEPEPEPVPQPP 825
Query: 858 LPSPP-PLPEKVDPPIVTLDDLFRTKPQP 775
P PP P PE PP KPQP
Sbjct: 826 QPQPPQPQPEPPAPP---------PKPQP 845
Score = 42.4 bits (98), Expect = 0.012
Identities = 31/107 (28%), Positives = 37/107 (33%), Gaps = 19/107 (17%)
Frame = -1
Query: 1038 EAPPPPPPQAASVSVPTVAPAPSS-----SQPEPSPRQQREQHPIPVAL----------- 907
+ P P PQ S P PAP S S+P+P+P P
Sbjct: 721 QPPSKPGPQPPSEPAPPSKPAPPSKPAPPSKPDPNPSSDPSSQKDPDTSLSSNPTSTSSS 780
Query: 906 ---PPPPPLSRAPPVARERLPSPPPLPEKVDPPIVTLDDLFRTKPQP 775
PP PP PP A P PPP P P + + PQP
Sbjct: 781 EPPPPSPPPPPPPPPAPAPAPPPPPPPPPPRPELEPEPEPVPQPPQP 827
Score = 42.4 bits (98), Expect = 0.012
Identities = 25/67 (37%), Positives = 27/67 (39%)
Frame = -1
Query: 1017 PQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERLPSPPPL 838
P + S PT SS P PSP P P PPPPP P E P P P
Sbjct: 766 PDTSLSSNPT--STSSSEPPPPSPPPPPPPPPAPAPAPPPPPPPPPPRPELEPEPEPVPQ 823
Query: 837 PEKVDPP 817
P + PP
Sbjct: 824 PPQPQPP 830
Score = 38.9 bits (89), Expect = 0.14
Identities = 24/73 (32%), Positives = 33/73 (44%), Gaps = 4/73 (5%)
Frame = -1
Query: 1026 PPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPL----SRAPPVARER 859
PP P + S S P P + QP+P P+ Q + +P + P PP S+ P +
Sbjct: 660 PPTPSSTSSS----RPPPPAPQPQPQPQPQPDPGSLPSSDPESPPSSEPGSQPPSKPGPQ 715
Query: 858 LPSPPPLPEKVDP 820
PS P P K P
Sbjct: 716 PPSDPQPPSKPGP 728
Score = 37.4 bits (85), Expect = 0.40
Identities = 25/74 (33%), Positives = 32/74 (42%), Gaps = 5/74 (6%)
Frame = -1
Query: 1023 PPPQAASVSVPTVAPAPSSSQPEPSPRQQ--REQHPIPVALP---PPPPLSRAPPVARER 859
PPP+ + PT + SS P P+P+ Q + P P +LP P P S P
Sbjct: 651 PPPEPTTTLPPTPSSTSSSRPPPPAPQPQPQPQPQPDPGSLPSSDPESPPSSEPGSQPPS 710
Query: 858 LPSPPPLPEKVDPP 817
P P P P PP
Sbjct: 711 KPGPQP-PSDPQPP 723
Score = 35.8 bits (81), Expect = 1.2
Identities = 19/56 (33%), Positives = 23/56 (40%)
Frame = -1
Query: 1044 KLEAPPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAP 877
+LE P P PQ P P P + P+P P P PPPPP + P
Sbjct: 813 ELEPEPEPVPQPPQPQPPQPQPEPPAPPPKPQP---------PQPPPPPPPPEQKP 859
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 957,538,923
Number of Sequences: 1393205
Number of extensions: 25149085
Number of successful extensions: 373384
Number of sequences better than 10.0: 7052
Number of HSP's better than 10.0 without gapping: 115164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236262
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 62912456556
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
SPDL025b10_f |
BP053534 |
1 |
526 |
| 2 |
SPDL098h03_f |
BP058187 |
13 |
566 |
| 3 |
MPDL061d06_f |
AV779600 |
21 |
524 |
| 4 |
MPDL035c05_f |
AV778233 |
27 |
545 |
| 5 |
SPDL014g12_f |
BP052891 |
333 |
858 |
| 6 |
MPDL038e09_f |
AV778433 |
334 |
832 |
| 7 |
SPDL017g09_f |
BP053086 |
360 |
764 |
| 8 |
SPDL072g04_f |
BP056476 |
385 |
952 |
| 9 |
MRL030a05_f |
BP085195 |
386 |
771 |
| 10 |
SPDL093d03_f |
BP057831 |
387 |
934 |
| 11 |
MFBL015h03_f |
BP042026 |
389 |
751 |
| 12 |
MPDL017d02_f |
AV777349 |
400 |
959 |
| 13 |
SPDL043h08_f |
BP054739 |
409 |
936 |
| 14 |
MPDL024b12_f |
AV777697 |
419 |
956 |
| 15 |
MRL039g02_f |
BP085648 |
435 |
797 |
| 16 |
MPDL049f09_f |
AV778992 |
436 |
892 |
| 17 |
MFBL005b05_f |
BP041508 |
439 |
974 |
| 18 |
GENLf032e07 |
BP064026 |
442 |
936 |
| 19 |
MPDL062e08_f |
AV779663 |
470 |
672 |
| 20 |
MF054b11_f |
BP031133 |
472 |
1026 |
| 21 |
MFBL003a10_f |
BP041401 |
479 |
973 |
| 22 |
MPDL044d11_f |
AV778730 |
484 |
974 |
| 23 |
MPDL014e06_f |
AV777231 |
484 |
861 |
| 24 |
SPDL016d11_f |
BP052993 |
484 |
930 |
| 25 |
MPDL009b08_f |
AV776962 |
484 |
621 |
| 26 |
GENLf048b06 |
BP064881 |
484 |
1004 |
| 27 |
SPDL005g08_f |
BP052308 |
486 |
937 |
| 28 |
GENLf035f06 |
BP064194 |
487 |
1017 |
| 29 |
MFBL045b04_f |
BP043536 |
487 |
972 |
| 30 |
MPDL008b09_f |
AV776906 |
490 |
730 |
| 31 |
MFBL041c02_f |
BP043324 |
491 |
1053 |
| 32 |
SPD052e10_f |
BP048160 |
491 |
1083 |
| 33 |
MRL015h05_f |
BP084507 |
499 |
831 |
| 34 |
MPDL087a11_f |
AV781027 |
507 |
1048 |
| 35 |
MFBL045d11_f |
BP043553 |
517 |
910 |
| 36 |
SPDL080h02_f |
BP057008 |
525 |
1086 |
| 37 |
MPDL077h11_f |
AV780497 |
532 |
1075 |
|
Lotus japonicus
Kazusa DNA Research Institute