Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000717A_C01 KMC000717A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM98085.1| AT5g42220/K5J14_2 [Arabidopsis thaliana] 60 3e-08
ref|NP_199037.1| putative protein; protein id: At5g42220.1 [Arab... 60 3e-08
gb|AAO72689.1| unknown [Oryza sativa (japonica cultivar-group)] 57 3e-07
dbj|BAC07052.1| hypothetical protein~similar to Arabidopsis thal... 57 3e-07
dbj|BAC16772.1| NtrC/NifA family homolog regulator [Burkholderia... 34 1.5
>gb|AAM98085.1| AT5g42220/K5J14_2 [Arabidopsis thaliana]
Length = 879
Score = 59.7 bits (143), Expect = 3e-08
Identities = 36/99 (36%), Positives = 58/99 (58%)
Frame = -3
Query: 627 FSATEPEPGAPYRDESSDNRSIQLDLQSVAERIDRLNPPTDVFRAVAENAVELSGSGSAS 448
FS P P P + D + Q+++QS+A+ I+ +PP DVFRA+ ENA +
Sbjct: 792 FSQGGPLPH-PATIQPDDRQPSQVNVQSMAQMIEHSDPPEDVFRAMVENA------AISQ 844
Query: 447 SDLLDELCSHESLAREYVDMLRYDVNQLLEGQSESDHVL 331
+L++ELC E+L++EY ++LR D+ EG+ + D L
Sbjct: 845 DELVNELCCDEALSQEYAELLRRDI----EGRLKDDQGL 879
>ref|NP_199037.1| putative protein; protein id: At5g42220.1 [Arabidopsis thaliana]
gi|10177007|dbj|BAB10195.1|
gene_id:K5J14.2~pir||T30561~similar to unknown protein
[Arabidopsis thaliana]
Length = 902
Score = 59.7 bits (143), Expect = 3e-08
Identities = 36/99 (36%), Positives = 58/99 (58%)
Frame = -3
Query: 627 FSATEPEPGAPYRDESSDNRSIQLDLQSVAERIDRLNPPTDVFRAVAENAVELSGSGSAS 448
FS P P P + D + Q+++QS+A+ I+ +PP DVFRA+ ENA +
Sbjct: 815 FSQGGPLPH-PATIQPDDRQPSQVNVQSMAQMIEHSDPPEDVFRAMVENA------AISQ 867
Query: 447 SDLLDELCSHESLAREYVDMLRYDVNQLLEGQSESDHVL 331
+L++ELC E+L++EY ++LR D+ EG+ + D L
Sbjct: 868 DELVNELCCDEALSQEYAELLRRDI----EGRLKDDQGL 902
>gb|AAO72689.1| unknown [Oryza sativa (japonica cultivar-group)]
Length = 343
Score = 56.6 bits (135), Expect = 3e-07
Identities = 28/82 (34%), Positives = 46/82 (55%)
Frame = -3
Query: 588 DESSDNRSIQLDLQSVAERIDRLNPPTDVFRAVAENAVELSGSGSASSDLLDELCSHESL 409
D++SD + Q+DL E I++ + P D+F AV E A + G + D+L+EL S L
Sbjct: 258 DDASDYGNSQIDLHQAREHIEQHDSPRDIFGAVLETAAQAYGEDESIEDMLEELVSDPEL 317
Query: 408 AREYVDMLRYDVNQLLEGQSES 343
+Y+ +L V Q ++ S+S
Sbjct: 318 TDDYLKLLLQQVRQRIQSASQS 339
>dbj|BAC07052.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 5,
At5g42220 [Oryza sativa (japonica cultivar-group)]
Length = 963
Score = 56.6 bits (135), Expect = 3e-07
Identities = 28/82 (34%), Positives = 46/82 (55%)
Frame = -3
Query: 588 DESSDNRSIQLDLQSVAERIDRLNPPTDVFRAVAENAVELSGSGSASSDLLDELCSHESL 409
D++SD + Q+DL E I++ + P D+F AV E A + G + D+L+EL S L
Sbjct: 878 DDASDYGNSQIDLHQAREHIEQHDSPRDIFGAVLETAAQAYGEDESIEDMLEELVSDPEL 937
Query: 408 AREYVDMLRYDVNQLLEGQSES 343
+Y+ +L V Q ++ S+S
Sbjct: 938 TDDYLKLLLQQVRQRIQSASQS 959
>dbj|BAC16772.1| NtrC/NifA family homolog regulator [Burkholderia sp. TH2]
Length = 532
Score = 34.3 bits (77), Expect = 1.5
Identities = 29/101 (28%), Positives = 46/101 (44%), Gaps = 6/101 (5%)
Frame = -3
Query: 597 PYRDESSDNRSIQLDLQ------SVAERIDRLNPPTDVFRAVAENAVELSGSGSASSDLL 436
P R +S D ++Q L SVAERID L T+ R AE SG +S +L+
Sbjct: 150 PERFDSIDMNTLQAFLSLAAATVSVAERIDTLERNTEEERQRAE--AYRQASGQSSRELI 207
Query: 435 DELCSHESLAREYVDMLRYDVNQLLEGQSESDHVLI*VYVH 313
+H+ L E + ++ L+ G++ L+ +H
Sbjct: 208 GSSAAHQQLVNEIRVVANSELTVLVTGETGVGKELVANAIH 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,441,056
Number of Sequences: 1393205
Number of extensions: 11559206
Number of successful extensions: 29596
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 28693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29569
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
