Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000712A_C02 KMC000712A_c02
(995 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK26130.1|AC084406_13 putative thiamin biosynthesis protein ... 238 8e-62
ref|NP_180524.1| putative thiamin biosynthesis protein; protein ... 236 3e-61
gb|AAG49550.1|AF264021_1 putative thiamine biosythesis protein T... 233 3e-60
ref|NP_301331.1| putative thiamine biosynthesis protein [Mycobac... 155 7e-37
ref|NP_214937.1| thiC [Mycobacterium tuberculosis H37Rv] gi|3024... 152 6e-36
>gb|AAK26130.1|AC084406_13 putative thiamin biosynthesis protein [Oryza sativa]
Length = 628
Score = 238 bits (608), Expect = 8e-62
Identities = 108/131 (82%), Positives = 124/131 (94%)
Frame = -1
Query: 995 AADLAKGHPHAQEWDDALSKARFEFRWMDQFALSLDPMTAMSFHDESLPSEGAKVAHFCS 816
AADLAKGHP+AQ WDD LSKARFEFRW+DQFALSLDP+TAMSFHDE+LPSEGAKVAHFCS
Sbjct: 498 AADLAKGHPYAQAWDDTLSKARFEFRWLDQFALSLDPVTAMSFHDETLPSEGAKVAHFCS 557
Query: 815 MCGPKFCSMKITEDVRKYAEKHGYGTAEEALLRGMDAMSAEFPSAQKTVSGEQHGEAGGE 636
MCGPKFCSMKITED+RKYA++HGYGT EEA+++GM+AMSAEF +A+KT+SGEQHGEAGGE
Sbjct: 558 MCGPKFCSMKITEDIRKYADEHGYGTVEEAVIQGMNAMSAEFSAARKTISGEQHGEAGGE 617
Query: 635 IYLPASYLSSK 603
IY+P SY + K
Sbjct: 618 IYVPESYTARK 628
>ref|NP_180524.1| putative thiamin biosynthesis protein; protein id: At2g29630.1,
supported by cDNA: gi_20260179 [Arabidopsis thaliana]
gi|25319657|pir||F84698 probable thiamin biosynthesis
protein [imported] - Arabidopsis thaliana
gi|3582335|gb|AAC35232.1| putative thiamin biosynthesis
protein [Arabidopsis thaliana]
gi|20260180|gb|AAM12988.1| putative thiamin biosynthesis
protein [Arabidopsis thaliana]
gi|22136156|gb|AAM91156.1| putative thiamin biosynthesis
protein [Arabidopsis thaliana]
Length = 644
Score = 236 bits (603), Expect = 3e-61
Identities = 109/133 (81%), Positives = 123/133 (91%)
Frame = -1
Query: 995 AADLAKGHPHAQEWDDALSKARFEFRWMDQFALSLDPMTAMSFHDESLPSEGAKVAHFCS 816
AADLAK HPHAQ WDDALSKARFEFRWMDQFALSLDPMTAMSFHDE+LP++GAKVAHFCS
Sbjct: 512 AADLAKQHPHAQAWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPADGAKVAHFCS 571
Query: 815 MCGPKFCSMKITEDVRKYAEKHGYGTAEEALLRGMDAMSAEFPSAQKTVSGEQHGEAGGE 636
MCGPKFCSMKITED+RKYAE++GYG+AEEA+ +GMDAMS EF A+KT+SGEQHGE GGE
Sbjct: 572 MCGPKFCSMKITEDIRKYAEENGYGSAEEAIRQGMDAMSEEFNIAKKTISGEQHGEVGGE 631
Query: 635 IYLPASYLSSKEK 597
IYLP SY+ + +K
Sbjct: 632 IYLPESYVKAAQK 644
>gb|AAG49550.1|AF264021_1 putative thiamine biosythesis protein ThiC [Poa secunda]
Length = 643
Score = 233 bits (595), Expect = 3e-60
Identities = 107/131 (81%), Positives = 122/131 (92%)
Frame = -1
Query: 995 AADLAKGHPHAQEWDDALSKARFEFRWMDQFALSLDPMTAMSFHDESLPSEGAKVAHFCS 816
AADLAK HP+AQ WDDALSKARFEFRW+DQFALSLDP+TAMSFHDE+LPS+GAKVAHFCS
Sbjct: 513 AADLAKCHPYAQAWDDALSKARFEFRWLDQFALSLDPVTAMSFHDETLPSDGAKVAHFCS 572
Query: 815 MCGPKFCSMKITEDVRKYAEKHGYGTAEEALLRGMDAMSAEFPSAQKTVSGEQHGEAGGE 636
MCGPKFCSMKITED+RKYA++HGYGT EEA+ +GM MSAEF +A+KT+SGEQHGEAGGE
Sbjct: 573 MCGPKFCSMKITEDIRKYADEHGYGTVEEAVRQGMSDMSAEFTAARKTISGEQHGEAGGE 632
Query: 635 IYLPASYLSSK 603
IY+P SYL+ K
Sbjct: 633 IYVPESYLAKK 643
>ref|NP_301331.1| putative thiamine biosynthesis protein [Mycobacterium leprae]
gi|7388313|sp|Q9ZBL0|THIC_MYCLE Thiamine biosynthesis
protein thiC gi|11279601|pir||T44743 probable thiamin
biosythesis protein thiC [imported] - Mycobacterium
leprae gi|4154058|emb|CAA22712.1| putative thiamine
biosythesis protein ThiC [Mycobacterium leprae]
gi|13092616|emb|CAC29802.1| putative thiamine
biosynthesis protein [Mycobacterium leprae]
Length = 547
Score = 155 bits (393), Expect = 7e-37
Identities = 81/124 (65%), Positives = 88/124 (70%)
Frame = -1
Query: 995 AADLAKGHPHAQEWDDALSKARFEFRWMDQFALSLDPMTAMSFHDESLPSEGAKVAHFCS 816
AADLAKG+P AQE DDALS ARFEFRW DQFALSLDP TA FHDE+LP+E AK AHFCS
Sbjct: 434 AADLAKGYPRAQERDDALSTARFEFRWNDQFALSLDPPTAREFHDETLPAEPAKTAHFCS 493
Query: 815 MCGPKFCSMKITEDVRKYAEKHGYGTAEEALLRGMDAMSAEFPSAQKTVSGEQHGEAGGE 636
MCGPKFCSM+IT D+R YA KHG T EEA+ GM SAEF E G
Sbjct: 494 MCGPKFCSMRITADIRVYAAKHGLDT-EEAIEMGMTEKSAEF------------AEHGNR 540
Query: 635 IYLP 624
+YLP
Sbjct: 541 VYLP 544
>ref|NP_214937.1| thiC [Mycobacterium tuberculosis H37Rv]
gi|3024726|sp|P96269|THIC_MYCTU Thiamine biosynthesis
protein thiC gi|7448741|pir||E70630 thiamin biosynthesis
protein thiC - Mycobacterium tuberculosis (strain H37RV)
gi|1817689|emb|CAB06563.1| thiC [Mycobacterium
tuberculosis H37Rv]
Length = 547
Score = 152 bits (385), Expect = 6e-36
Identities = 80/127 (62%), Positives = 87/127 (67%), Gaps = 3/127 (2%)
Frame = -1
Query: 995 AADLAKGHPHAQEWDDALSKARFEFRWMDQFALSLDPMTAMSFHDESLPSEGAKVAHFCS 816
AADLAKGHP AQE DDALS ARFEFRW DQFALSLDP TA FHDE+LP+E AK AHFCS
Sbjct: 430 AADLAKGHPRAQERDDALSTARFEFRWNDQFALSLDPDTAREFHDETLPAEPAKTAHFCS 489
Query: 815 MCGPKFCSMKITEDVRKYAEKHGYGT---AEEALLRGMDAMSAEFPSAQKTVSGEQHGEA 645
MCGPKFCSM+IT+DVR+YA +HG T E L GM S EF E
Sbjct: 490 MCGPKFCSMRITQDVREYAAEHGLETEADIEAVLAAGMAEKSREF------------AEH 537
Query: 644 GGEIYLP 624
G +YLP
Sbjct: 538 GNRVYLP 544
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 871,103,703
Number of Sequences: 1393205
Number of extensions: 19114149
Number of successful extensions: 45081
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 42996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45027
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57117888189
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
