Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000709A_C03 KMC000709A_c03
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_524030.2| Cyclin A CG5940-PA gi|13959680|sp|P14785|CG2A_D... 32 5.3
gb|AAA28435.1| cyclin A 32 5.3
pir||JC1390 cyclin A - fruit fly (Drosophila melanogaster) gi|40... 32 5.3
gb|AAN71390.1| RE38818p [Drosophila melanogaster] 32 5.3
dbj|BAA01629.1| cyclin A [Drosophila melanogaster] 32 5.3
>ref|NP_524030.2| Cyclin A CG5940-PA gi|13959680|sp|P14785|CG2A_DROME
G2/mitotic-specific cyclin A gi|16198237|gb|AAL13941.1|
LD44443p [Drosophila melanogaster]
gi|23096134|gb|AAF49999.2| CG5940-PA [Drosophila
melanogaster]
Length = 491
Score = 32.3 bits (72), Expect = 5.3
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = -1
Query: 271 FLIFYNMEQGFKFMTIF------EELRK*IHPLNSICPSPQIMLRPHLYSLNFQHWYPFL 110
+ + +M + K+MT++ E + L S+ S + L H+ L + W P L
Sbjct: 343 YAVLCDMPEKLKYMTLYISELSLMEGETYLQYLPSLMSSASVALARHI--LGMEMWTPRL 400
Query: 109 ESILTLNNDDISFILLHQILFHR 41
E I T +D+ ++LH H+
Sbjct: 401 EEITTYKLEDLKTVVLHLCHTHK 423
>gb|AAA28435.1| cyclin A
Length = 491
Score = 32.3 bits (72), Expect = 5.3
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = -1
Query: 271 FLIFYNMEQGFKFMTIF------EELRK*IHPLNSICPSPQIMLRPHLYSLNFQHWYPFL 110
+ + +M + K+MT++ E + L S+ S + L H+ L + W P L
Sbjct: 343 YAVLCDMPEKLKYMTLYISELSLMEGETYLQYLPSLMSSASVALARHI--LGMEMWTPRL 400
Query: 109 ESILTLNNDDISFILLHQILFHR 41
E I T +D+ ++LH H+
Sbjct: 401 EEITTYKLEDLKTVVLHLCHTHK 423
>pir||JC1390 cyclin A - fruit fly (Drosophila melanogaster)
gi|407199|dbj|BAA01628.1| cyclin A [Drosophila
melanogaster]
Length = 491
Score = 32.3 bits (72), Expect = 5.3
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = -1
Query: 271 FLIFYNMEQGFKFMTIF------EELRK*IHPLNSICPSPQIMLRPHLYSLNFQHWYPFL 110
+ + +M + K+MT++ E + L S+ S + L H+ L + W P L
Sbjct: 343 YAVLCDMPEKLKYMTLYISELSLMEGETYLQYLPSLMSSASVALARHI--LGMEMWTPRL 400
Query: 109 ESILTLNNDDISFILLHQILFHR 41
E I T +D+ ++LH H+
Sbjct: 401 EEITTYKLEDLKTVVLHLCHTHK 423
>gb|AAN71390.1| RE38818p [Drosophila melanogaster]
Length = 345
Score = 32.3 bits (72), Expect = 5.3
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = -1
Query: 271 FLIFYNMEQGFKFMTIF------EELRK*IHPLNSICPSPQIMLRPHLYSLNFQHWYPFL 110
+ + +M + K+MT++ E + L S+ S + L H+ L + W P L
Sbjct: 197 YAVLCDMPEKLKYMTLYISELSLMEGETYLQYLPSLMSSASVALARHI--LGMEMWTPRL 254
Query: 109 ESILTLNNDDISFILLHQILFHR 41
E I T +D+ ++LH H+
Sbjct: 255 EEITTYKLEDLKTVVLHLCHTHK 277
>dbj|BAA01629.1| cyclin A [Drosophila melanogaster]
Length = 491
Score = 32.3 bits (72), Expect = 5.3
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = -1
Query: 271 FLIFYNMEQGFKFMTIF------EELRK*IHPLNSICPSPQIMLRPHLYSLNFQHWYPFL 110
+ + +M + K+MT++ E + L S+ S + L H+ L + W P L
Sbjct: 343 YAVLCDMPEKLKYMTLYISELSLMEGETYLQYLPSLMSSASVALARHI--LGMEMWTPRL 400
Query: 109 ESILTLNNDDISFILLHQILFHR 41
E I T +D+ ++LH H+
Sbjct: 401 EEITTYKLEDLKTVVLHLCHTHK 423
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,847,190
Number of Sequences: 1393205
Number of extensions: 11764447
Number of successful extensions: 24343
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24335
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
