Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000706A_C01 KMC000706A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702422.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.19
gb|EAA16239.1| DnaJ domain, putative [Plasmodium yoelii yoelii] 32 4.6
pir||T12120 NADH dehydrogenase 5 - Atlantic horseshoe crab mitoc... 31 6.0
sp|Q9HH84|DPOL_THEG8 DNA polymerase [Contains: Endonuclease PI-T... 31 6.0
ref|NP_765559.1| amino acid ABC transporter-like protein [Staphy... 31 7.8
>ref|NP_702422.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497606|gb|AAN37146.1|AE014825_5 hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1374
Score = 36.2 bits (82), Expect = 0.19
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = +1
Query: 28 MSTMQAPMYLYN----MKMNTFLQKLDILSYQ*KQSIYELRLSYPYNLASKYIMAYM*QI 195
M+ P YL N M + FL LDIL Q K++ + P + + Y
Sbjct: 1074 MNQFVQPWYLKNLNKSMDIKKFLNSLDILENQKKKTYIVHGMEIPEQIFNMY-------- 1125
Query: 196 SKANSTTSSKKGRKKRKMKNVSNKKHELTNPS 291
TS KK +KK+K ++ +H PS
Sbjct: 1126 -----NTSKKKAKKKKKCSKINTNEHLYDQPS 1152
>gb|EAA16239.1| DnaJ domain, putative [Plasmodium yoelii yoelii]
Length = 1287
Score = 31.6 bits (70), Expect = 4.6
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Frame = +1
Query: 7 LRYRNRFMSTMQAPMYLYN---MKMNTF----LQKLDILSYQ*KQSIYELRLSYPYNLAS 165
LR + F+ YL+N +KMN+ QKL + +Q+ + Y Y + S
Sbjct: 640 LRIYDLFVQKYNNVSYLHNRGSLKMNSNQYNQFQKLVYHFFNNQQNCIFKNIFYIYPIYS 699
Query: 166 KYIMAYM*QISKANSTTSSKKGRKKRKMKNVSNKKH 273
K I + SK + SSKK +KK+ N+++ K+
Sbjct: 700 KNIPPF----SKTETYNSSKKKKKKKIXTNINDSKN 731
>pir||T12120 NADH dehydrogenase 5 - Atlantic horseshoe crab mitochondrion
(fragment) gi|2316054|gb|AAC47688.1| NADH dehydrogenase
5 [Limulus polyphemus]
Length = 349
Score = 31.2 bits (69), Expect = 6.0
Identities = 32/102 (31%), Positives = 46/102 (44%), Gaps = 11/102 (10%)
Frame = -1
Query: 281 VNSCFLLLTFFIFLFFLPFLELVVE--LALEICYI*AMMYFE---ARLYG*ESLNS*MLC 117
V+ C + L FF+FLFFL L V ++ C + MM F+ L S ++
Sbjct: 12 VDVCNIFLFFFVFLFFLILLVFVEYHLFSMNGCPVEFMMVFDWVSLMFLSFVMLISSVVV 71
Query: 116 FY*Y------ERISSFCKKVFIFMLYRYMGACIVDINLFLYL 9
FY E ++ FC V +F+L MG I+ NL L
Sbjct: 72 FYSEEYMEGDENLNRFCYLVLLFVL--SMGLLILSPNLISIL 111
>sp|Q9HH84|DPOL_THEG8 DNA polymerase [Contains: Endonuclease PI-Tspge8I (Tsp-GE8 pol-1
intein); Endonuclease PI-Tspge8II (Tsp-GE8 pol-2 intein)]
gi|10799895|emb|CAC12850.1| DNA polymerase and
endonucleases [Thermococcus sp. GE8]
Length = 1699
Score = 31.2 bits (69), Expect = 6.0
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +1
Query: 142 SYPYNLASKYIMAYM*QISKANSTTSSKKGRKKRKMKNVSNKKHELTNPSACLVWL 309
S+ +NL +YI A++ + A+ T S ++G + ++ +V+ EL+N L+WL
Sbjct: 1306 SFMFNLPREYIEAFLRGLFSADGTVSLRRGIPEIRLTSVN---RELSNEVRKLLWL 1358
>ref|NP_765559.1| amino acid ABC transporter-like protein [Staphylococcus epidermidis
ATCC 12228] gi|27316470|gb|AAO05645.1|AE016750_250 amino
acid ABC transporter-like protein [Staphylococcus
epidermidis ATCC 12228]
Length = 458
Score = 30.8 bits (68), Expect = 7.8
Identities = 17/57 (29%), Positives = 30/57 (51%)
Frame = -1
Query: 362 LVILHMLPERQKYLSQHQSQTRQAEGFVNSCFLLLTFFIFLFFLPFLELVVELALEI 192
++I+ + +K QHQS + G +++L+FFIF+F L F +A+ I
Sbjct: 374 MIIVSYIAYVKKNPEQHQSSAFKLWGGKIIAYIVLSFFIFIFILLFFSKDTRVAIFI 430
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,414,130
Number of Sequences: 1393205
Number of extensions: 7699759
Number of successful extensions: 22972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22945
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
