Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000705A_C01 KMC000705A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 152 2e-36
dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro... 129 2e-29
pir||B86292 F7H2.12 protein - Arabidopsis thaliana gi|8927657|gb... 129 2e-29
ref|NP_173030.1| hypothetical protein; protein id: At1g15780.1 [... 129 2e-29
gb|AAG12675.1|AC027033_10 hypothetical protein; 58049-55604 [Ara... 105 3e-22
>gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]
Length = 1405
Score = 152 bits (384), Expect = 2e-36
Identities = 74/94 (78%), Positives = 81/94 (85%)
Frame = -1
Query: 520 QMSTIQPLRLLIPPNYPNCSPILLDQFSFESRGENGDLSVKAKLRFSISLRSLSEPMSLG 341
QMS IQPLRLL+P NYPNCSPILLD+F E E DLSVKAK RFSISLRSLS+PMSLG
Sbjct: 1306 QMSPIQPLRLLVPTNYPNCSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLG 1365
Query: 340 EIVRTWDACARSVISEYAQQRGGGSFSSRYGSWD 239
EI RTWD CAR+VISEYAQQ GGGSFSS+YG+W+
Sbjct: 1366 EIARTWDVCARTVISEYAQQSGGGSFSSKYGTWE 1399
>dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)]
Length = 1359
Score = 129 bits (325), Expect = 2e-29
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = -1
Query: 520 QMSTIQPLRLLIPPNYPNCSPILLDQFSFESRGENGDLSVKAKLRFSISLRSLSEPMSLG 341
QMS I PLR+L+P +YP CSP+LLD+F E R + DLS KA+ +FSI LR L+EPMSL
Sbjct: 1262 QMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSD-DLSTKARSKFSILLRGLAEPMSLR 1320
Query: 340 EIVRTWDACARSVISEYAQQRGGGSFSSRYGSWD 239
EI RTWDACAR VI+EYAQQ GGGSFSS YG W+
Sbjct: 1321 EIARTWDACARKVIAEYAQQTGGGSFSSSYGCWE 1354
>pir||B86292 F7H2.12 protein - Arabidopsis thaliana
gi|8927657|gb|AAF82148.1|AC034256_12 EST gb|N38213 comes
from this gene. [Arabidopsis thaliana]
Length = 1366
Score = 129 bits (324), Expect = 2e-29
Identities = 63/94 (67%), Positives = 76/94 (80%)
Frame = -1
Query: 520 QMSTIQPLRLLIPPNYPNCSPILLDQFSFESRGENGDLSVKAKLRFSISLRSLSEPMSLG 341
QMS IQPLRLL+P +YPN SP LLD+ E+ EN DLS KA RF+I LRSLS+PMSL
Sbjct: 1267 QMSPIQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLK 1326
Query: 340 EIVRTWDACARSVISEYAQQRGGGSFSSRYGSWD 239
+I +TWDACAR+VI EYAQQ GGG+FSS+YG+W+
Sbjct: 1327 DIAKTWDACARAVICEYAQQFGGGTFSSKYGTWE 1360
>ref|NP_173030.1| hypothetical protein; protein id: At1g15780.1 [Arabidopsis thaliana]
Length = 1335
Score = 129 bits (324), Expect = 2e-29
Identities = 63/94 (67%), Positives = 76/94 (80%)
Frame = -1
Query: 520 QMSTIQPLRLLIPPNYPNCSPILLDQFSFESRGENGDLSVKAKLRFSISLRSLSEPMSLG 341
QMS IQPLRLL+P +YPN SP LLD+ E+ EN DLS KA RF+I LRSLS+PMSL
Sbjct: 1236 QMSPIQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLK 1295
Query: 340 EIVRTWDACARSVISEYAQQRGGGSFSSRYGSWD 239
+I +TWDACAR+VI EYAQQ GGG+FSS+YG+W+
Sbjct: 1296 DIAKTWDACARAVICEYAQQFGGGTFSSKYGTWE 1329
>gb|AAG12675.1|AC027033_10 hypothetical protein; 58049-55604 [Arabidopsis thaliana]
Length = 634
Score = 105 bits (262), Expect = 3e-22
Identities = 49/97 (50%), Positives = 73/97 (74%), Gaps = 1/97 (1%)
Frame = -1
Query: 520 QMSTIQPLRLLIPPNYPNCSPILLDQFSFE-SRGENGDLSVKAKLRFSISLRSLSEPMSL 344
+++ IQPLRLL+P +YP SP++LD+ SF+ S + DLS + + RFS+S+R +SEP SL
Sbjct: 534 KIAQIQPLRLLVPLDYPYSSPMVLDEISFDTSVHKYEDLSARTRSRFSLSMREISEPGSL 593
Query: 343 GEIVRTWDACARSVISEYAQQRGGGSFSSRYGSWDAV 233
EI +TW C R+ + EYA++ GGG+FSS+YG+W+ V
Sbjct: 594 KEIAQTWTDCVRATMVEYAERHGGGTFSSKYGAWETV 630
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,196,508
Number of Sequences: 1393205
Number of extensions: 9599942
Number of successful extensions: 21223
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21214
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
