Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000703A_C03 KMC000703A_c03
(700 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK43947.1|AF370132_1 unknown protein [Arabidopsis thaliana] 89 6e-17
ref|NP_199943.1| splicing factor 1 (SF1), putative; protein id: ... 89 6e-17
sp|P21997|SSGP_VOLCA SULFATED SURFACE GLYCOPROTEIN 185 (SSG 185)... 62 6e-09
emb|CAB62280.1| hydroxyproline-rich glycoprotein DZ-HRGP [Volvox... 59 5e-08
pir||S14970 extensin class I (clone w17-1) - tomato gi|1345531|e... 58 1e-07
>gb|AAK43947.1|AF370132_1 unknown protein [Arabidopsis thaliana]
Length = 804
Score = 89.0 bits (219), Expect = 6e-17
Identities = 49/109 (44%), Positives = 57/109 (51%), Gaps = 28/109 (25%)
Frame = -1
Query: 679 PTYPPSYGYPPYYNAVPPPPPPAPVTS-EQSPSFGNVPWASNPMVPPPPSDN--QSQPRA 509
P PP YP YYNAVPPP PPAP +S + S + GN+PWA+NP V P + P A
Sbjct: 696 PGQPPYMSYPSYYNAVPPPTPPAPASSTDHSQNMGNMPWANNPSVSTPDHSQGLVNAPWA 755
Query: 508 TNPPLPPA-------------------------SSAGDSEYEKFMAEMK 437
NPP+PP SS G+SEYEKFMAEMK
Sbjct: 756 PNPPMPPTVGYSQSMGNVPWAPKPPVQPPAENPSSVGESEYEKFMAEMK 804
Score = 41.6 bits (96), Expect = 0.011
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 700 SMPPPPQPTYPPSYG-YPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQ 524
++PPPP +Y P +G + P Y PPPPP VT P P +S P PP Q
Sbjct: 616 ALPPPPPGSYHPVHGQHMPPYGMQYPPPPP-HVTQAPPPGTTQNPSSSEPQQSFPPG-VQ 673
Query: 523 SQPRATNPPLPP 488
+ A +PP
Sbjct: 674 ADSGAATSSIPP 685
Score = 37.4 bits (85), Expect = 0.20
Identities = 27/71 (38%), Positives = 31/71 (43%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQP 515
PP P PP+ GYPP + PP P+ + S VPW PP PS P
Sbjct: 565 PPGPPAPQPPTQGYPP--SNQPPGAYPSQQYATGGYSTAPVPWG-----PPVPS---YSP 614
Query: 514 RATNPPLPPAS 482
A PP PP S
Sbjct: 615 YALPPP-PPGS 624
Score = 36.6 bits (83), Expect = 0.35
Identities = 25/76 (32%), Positives = 29/76 (37%)
Frame = -1
Query: 685 PQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQPRAT 506
P P PP Y PY PPP PV + P +G PPPP P T
Sbjct: 602 PVPWGPPVPSYSPYALPPPPPGSYHPVHGQHMPPYG-------MQYPPPP------PHVT 648
Query: 505 NPPLPPASSAGDSEYE 458
P PP ++ S E
Sbjct: 649 QAP-PPGTTQNPSSSE 663
>ref|NP_199943.1| splicing factor 1 (SF1), putative; protein id: At5g51300.1, supported
by cDNA: gi_13877738 [Arabidopsis thaliana]
gi|8843867|dbj|BAA97393.1| contains similarity to
transcription or splicing factor~gene_id:MWD22.25
[Arabidopsis thaliana] gi|23297082|gb|AAN13087.1| unknown
protein [Arabidopsis thaliana]
Length = 804
Score = 89.0 bits (219), Expect = 6e-17
Identities = 49/109 (44%), Positives = 57/109 (51%), Gaps = 28/109 (25%)
Frame = -1
Query: 679 PTYPPSYGYPPYYNAVPPPPPPAPVTS-EQSPSFGNVPWASNPMVPPPPSDN--QSQPRA 509
P PP YP YYNAVPPP PPAP +S + S + GN+PWA+NP V P + P A
Sbjct: 696 PGQPPYMSYPSYYNAVPPPTPPAPASSTDHSQNMGNMPWANNPSVSTPDHSQGLVNAPWA 755
Query: 508 TNPPLPPA-------------------------SSAGDSEYEKFMAEMK 437
NPP+PP SS G+SEYEKFMAEMK
Sbjct: 756 PNPPMPPTVGYSQSMGNVPWAPKPPVQPPAENPSSVGESEYEKFMAEMK 804
Score = 41.6 bits (96), Expect = 0.011
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 700 SMPPPPQPTYPPSYG-YPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQ 524
++PPPP +Y P +G + P Y PPPPP VT P P +S P PP Q
Sbjct: 616 ALPPPPPGSYHPVHGQHMPPYGMQYPPPPP-HVTQAPPPGTTQNPSSSEPQQSFPPG-VQ 673
Query: 523 SQPRATNPPLPP 488
+ A +PP
Sbjct: 674 ADSGAATSSIPP 685
Score = 37.4 bits (85), Expect = 0.20
Identities = 27/71 (38%), Positives = 31/71 (43%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQP 515
PP P PP+ GYPP + PP P+ + S VPW PP PS P
Sbjct: 565 PPGPPAPQPPTQGYPP--SNQPPGAYPSQQYATGGYSTAPVPWG-----PPVPS---YSP 614
Query: 514 RATNPPLPPAS 482
A PP PP S
Sbjct: 615 YALPPP-PPGS 624
Score = 36.6 bits (83), Expect = 0.35
Identities = 25/76 (32%), Positives = 29/76 (37%)
Frame = -1
Query: 685 PQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQPRAT 506
P P PP Y PY PPP PV + P +G PPPP P T
Sbjct: 602 PVPWGPPVPSYSPYALPPPPPGSYHPVHGQHMPPYG-------MQYPPPP------PHVT 648
Query: 505 NPPLPPASSAGDSEYE 458
P PP ++ S E
Sbjct: 649 QAP-PPGTTQNPSSSE 663
>sp|P21997|SSGP_VOLCA SULFATED SURFACE GLYCOPROTEIN 185 (SSG 185) gi|99441|pir||A33647
sulfated surface glycoprotein 185 - Volvox carteri
gi|1405821|emb|CAA35953.1| SULFATED SURFACE GLYCOPROTEIN
185 [Volvox carteri]
Length = 485
Score = 62.4 bits (150), Expect = 6e-09
Identities = 35/78 (44%), Positives = 37/78 (46%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQP 515
PPPP P PPS PP PPPPPP P SPS P + +P VPPPPS P
Sbjct: 267 PPPPPPPPPPSPPPPP-----PPPPPPPPPPPPPSPSPPRKPPSPSPPVPPPPSPPSVLP 321
Query: 514 RATNPPLPPASSAGDSEY 461
AT P S S Y
Sbjct: 322 AATGFPFCECVSRSPSSY 339
Score = 57.0 bits (136), Expect = 2e-07
Identities = 32/77 (41%), Positives = 38/77 (48%), Gaps = 3/77 (3%)
Frame = -1
Query: 700 SMPPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQS 521
S PP P+P PP PP + PPPPPP P PS P P PPPP + S
Sbjct: 243 SPPPSPRPPSPP----PPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPS 298
Query: 520 QPR---ATNPPLPPASS 479
PR + +PP+PP S
Sbjct: 299 PPRKPPSPSPPVPPPPS 315
Score = 45.8 bits (107), Expect = 6e-04
Identities = 26/70 (37%), Positives = 28/70 (39%)
Frame = -1
Query: 697 MPPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQ 518
+PP PQPT PP P PPPP+P P P PPPP S
Sbjct: 229 LPPSPQPTASSRPPSPPPSPRPPSPPPPSPSPPPPPP----------PPPPPPPPPPPSP 278
Query: 517 PRATNPPLPP 488
P PP PP
Sbjct: 279 PPPPPPPPPP 288
Score = 40.8 bits (94), Expect = 0.018
Identities = 22/54 (40%), Positives = 25/54 (45%)
Frame = -1
Query: 649 PYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQPRATNPPLPP 488
P N P PP P P S + PS P + P PPPPS + P PP PP
Sbjct: 222 PAPNNSPLPPSPQPTASSRPPS---PPPSPRPPSPPPPSPSPPPPPPPPPPPPP 272
>emb|CAB62280.1| hydroxyproline-rich glycoprotein DZ-HRGP [Volvox carteri f.
nagariensis]
Length = 409
Score = 59.3 bits (142), Expect = 5e-08
Identities = 31/71 (43%), Positives = 32/71 (44%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQP 515
PPPP P PP PP PPPPPP P S P P NP PPPP P
Sbjct: 98 PPPPPPPPPPPPSPPP-----PPPPPPPPPPSPPPPPPPPPPPPPNPPPPPPPPPPSPSP 152
Query: 514 RATNPPLPPAS 482
+ PP PP S
Sbjct: 153 PPSPPPSPPPS 163
Score = 56.6 bits (135), Expect = 3e-07
Identities = 30/69 (43%), Positives = 31/69 (44%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQP 515
PPPP P PP PP + PPPPPP PV P P S P PPPP P
Sbjct: 68 PPPPPPPPPPQPPLPP--SPSPPPPPPPPVPPPPPPPPPPPPPPSPPPPPPPPPPPPPSP 125
Query: 514 RATNPPLPP 488
PP PP
Sbjct: 126 PPPPPPPPP 134
Score = 56.2 bits (134), Expect = 4e-07
Identities = 32/78 (41%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAV------PPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPS 533
PPPPQP PPS PP PPPPPP P + P P S P PPPP
Sbjct: 74 PPPPQPPLPPSPSPPPPPPPPVPPPPPPPPPPPPPPSPPPPPPPPPPPPPSPPPPPPPPP 133
Query: 532 DNQSQPRATNPPLPPASS 479
P PP PP+ S
Sbjct: 134 PPPPNPPPPPPPPPPSPS 151
Score = 55.5 bits (132), Expect = 7e-07
Identities = 33/73 (45%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPP--PPSDNQS 521
PPPP P PP PP N PPPPPP P S PS P S P PP PP
Sbjct: 120 PPPPSPPPPPPPPPPPPPNPPPPPPPPPPSPS-PPPSPPPSPPPSPPPSPPPSPPPSPPP 178
Query: 520 QPRATNPPLPPAS 482
P + PP PP S
Sbjct: 179 SPPPSPPPRPPPS 191
Score = 55.5 bits (132), Expect = 7e-07
Identities = 30/71 (42%), Positives = 34/71 (47%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQP 515
PPPP P PP PP + PPPPPP P P P + +P PPPS S P
Sbjct: 106 PPPPSPPPPPPPPPPPPPSPPPPPPPPPPPPPNPPPPPPPPPPSPSPPPSPPPSPPPSPP 165
Query: 514 RATNPPLPPAS 482
+ PP PP S
Sbjct: 166 -PSPPPSPPPS 175
Score = 53.1 bits (126), Expect = 4e-06
Identities = 31/75 (41%), Positives = 33/75 (43%), Gaps = 2/75 (2%)
Frame = -1
Query: 700 SMPPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPP--PPSDN 527
S PPPP P PP PP PPPPPP P + P P S P PP PP
Sbjct: 110 SPPPPPPPPPPPPPSPPP-----PPPPPPPPPPNPPPPPPPPPPSPSPPPSPPPSPPPSP 164
Query: 526 QSQPRATNPPLPPAS 482
P + PP PP S
Sbjct: 165 PPSPPPSPPPSPPPS 179
Score = 51.6 bits (122), Expect = 1e-05
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -1
Query: 694 PPP--PQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQS 521
PPP P P PP P + PPPPPP P PS P P+ PPPP
Sbjct: 46 PPPGTPPPGVPPPTPSGPEHPPPPPPPPPPPPQPPLPPSPSPPPPPPPPVPPPPPPPPPP 105
Query: 520 QPRATNPPLPP 488
P + PP PP
Sbjct: 106 PPPPSPPPPPP 116
Score = 51.2 bits (121), Expect = 1e-05
Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPP--PPSDNQS 521
PPPP P PPS PP PPP PP PS P S P PP PP
Sbjct: 139 PPPPPPPPPPSPSPPPSPPPSPPPSPPPSPPPSPPPSPPPSPPPSPPPRPPPSPPPSPPP 198
Query: 520 QPRATNPPLPPAS 482
P + PP PP S
Sbjct: 199 SPPPSPPPRPPPS 211
Score = 50.4 bits (119), Expect = 2e-05
Identities = 31/73 (42%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPP--PPSDNQS 521
PPPP P PP PP + PP PPP+P S PS P S P PP PP
Sbjct: 132 PPPPPPNPPPPPPPPPPSPSPPPSPPPSPPPS-PPPSPPPSPPPSPPPSPPPSPPPRPPP 190
Query: 520 QPRATNPPLPPAS 482
P + PP PP S
Sbjct: 191 SPPPSPPPSPPPS 203
Score = 50.4 bits (119), Expect = 2e-05
Identities = 28/73 (38%), Positives = 33/73 (44%), Gaps = 1/73 (1%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPP-PSDNQSQ 518
PP P P PP PP P PPPP+P+ P + P P PPP P +
Sbjct: 268 PPSPPPPLPPPPSPPP-----PSPPPPSPLPPSPRPPKPSPPNNPFPRPPPPNPPPPRPP 322
Query: 517 PRATNPPLPPASS 479
P + NPP PP S
Sbjct: 323 PPSPNPPRPPPPS 335
Score = 50.4 bits (119), Expect = 2e-05
Identities = 31/73 (42%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPP--PPPAPVTSEQSPSFGNVPWASNPMVPP--PPSDN 527
PPPP P PP PP PPP PPP P SPS P S P PP PP
Sbjct: 113 PPPPPPPPPPPSPPPPPPPPPPPPPNPPPPPPPPPPSPSPPPSPPPSPPPSPPPSPPPSP 172
Query: 526 QSQPRATNPPLPP 488
P + PP PP
Sbjct: 173 PPSPPPSPPPSPP 185
Score = 50.1 bits (118), Expect = 3e-05
Identities = 31/73 (42%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYN----AVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDN 527
PPPP P PP PP N P PPPP P +P P S P PPPPS
Sbjct: 311 PPPPNP--PPPRPPPPSPNPPRPPPPSPPPPRPPPPSPNPPRPPPPSPSPPKPPPPPSPP 368
Query: 526 QSQPRATNPPLPP 488
PR PP PP
Sbjct: 369 PRPPR--RPPRPP 379
Score = 49.7 bits (117), Expect = 4e-05
Identities = 31/75 (41%), Positives = 33/75 (43%), Gaps = 3/75 (4%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYP---PYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQ 524
PPPP P PPS P P N P PPPP P P N P P PPP +
Sbjct: 286 PPPPSPL-PPSPRPPKPSPPNNPFPRPPPPNPPPPRPPPPSPNPPRPPPPSPPPP----R 340
Query: 523 SQPRATNPPLPPASS 479
P + NPP PP S
Sbjct: 341 PPPPSPNPPRPPPPS 355
Score = 49.7 bits (117), Expect = 4e-05
Identities = 31/75 (41%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -1
Query: 700 SMPPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQS 521
S PP P P+ PPS PP PP PPP+P S P + NP P PPS +
Sbjct: 171 SPPPSPPPSPPPS---PP--PRPPPSPPPSPPPSPPPSPPPRPPPSPNPPSPRPPSPSPP 225
Query: 520 QPR--ATNPPLPPAS 482
PR PP PP S
Sbjct: 226 SPRPPPRRPPFPPPS 240
Score = 48.9 bits (115), Expect = 7e-05
Identities = 27/72 (37%), Positives = 30/72 (41%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQP 515
PP P P+ PPS P P P PP+P SP P P PP P + P
Sbjct: 189 PPSPPPSPPPSPPPSPPPRPPPSPNPPSPRPPSPSPPSPRPPPRRPPFPPPSPPPPRPPP 248
Query: 514 RATNPPLPPASS 479
A PP PP S
Sbjct: 249 PAPPPPRPPPPS 260
Score = 47.0 bits (110), Expect = 3e-04
Identities = 28/84 (33%), Positives = 37/84 (43%), Gaps = 4/84 (4%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQP 515
PPP +P +PP PP P PPPP P P P + P +PPPPS P
Sbjct: 229 PPPRRPPFPPP-SPPPPRPPPPAPPPPRPPPPSPPPPLPPPP-SPPPPLPPPPSPPPPSP 286
Query: 514 RATNP----PLPPASSAGDSEYEK 455
+P P PP S ++ + +
Sbjct: 287 PPPSPLPPSPRPPKPSPPNNPFPR 310
Score = 46.6 bits (109), Expect = 3e-04
Identities = 32/78 (41%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Frame = -1
Query: 700 SMPPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVP---PPPSD 530
S PP P P+ PPS PP PPP PP PS P S P P PPPS
Sbjct: 155 SPPPSPPPSPPPSP--PPSPPPSPPPSPPPSPPPRPPPSPPPSPPPSPPPSPPPRPPPSP 212
Query: 529 NQSQPRATNP----PLPP 488
N PR +P P PP
Sbjct: 213 NPPSPRPPSPSPPSPRPP 230
Score = 46.6 bits (109), Expect = 3e-04
Identities = 30/71 (42%), Positives = 33/71 (46%)
Frame = -1
Query: 700 SMPPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQS 521
S PP P P+ PPS PP + PP PPP P S PS P S P PPP
Sbjct: 183 SPPPRPPPSPPPS---PP--PSPPPSPPPRPPPSPNPPS-PRPPSPSPPSPRPPPRRPPF 236
Query: 520 QPRATNPPLPP 488
P + PP PP
Sbjct: 237 PPPSPPPPRPP 247
Score = 46.2 bits (108), Expect = 4e-04
Identities = 26/69 (37%), Positives = 29/69 (41%)
Frame = -1
Query: 691 PPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQPR 512
PPP P+ P PP PP PP P S P VP P PPPP + P
Sbjct: 56 PPPTPSGPEHPPPPPPPPPPPPQPPLPPSPSPPPPPPPPVPPPPPPPPPPPPPPSPPPPP 115
Query: 511 ATNPPLPPA 485
PP PP+
Sbjct: 116 PPPPPPPPS 124
Score = 46.2 bits (108), Expect = 4e-04
Identities = 27/70 (38%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = -1
Query: 694 PPPPQPTYP-PSYGYPPYYNAVPP-PPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQS 521
PPPP+P P P PP + PP PPPP+P P +P + P P PP++
Sbjct: 251 PPPPRPPPPSPPPPLPPPPSPPPPLPPPPSPPPPSPPPP-SPLPPSPRPPKPSPPNNPFP 309
Query: 520 QPRATNPPLP 491
+P NPP P
Sbjct: 310 RPPPPNPPPP 319
Score = 45.8 bits (107), Expect = 6e-04
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = -1
Query: 694 PPPPQPTYPPS-YGYPPYYNAVPP-PPPPAPVTSEQSPSFGNVPW----ASNPMVPPPPS 533
P PP+P+ P + + PP N PP PPPP+P P P + NP PPPPS
Sbjct: 296 PRPPKPSPPNNPFPRPPPPNPPPPRPPPPSPNPPRPPPPSPPPPRPPPPSPNPPRPPPPS 355
Query: 532 DNQSQPRATNPPLPP 488
S P+ PP PP
Sbjct: 356 --PSPPKPPPPPSPP 368
Score = 45.4 bits (106), Expect = 7e-04
Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = -1
Query: 694 PPPPQPTYPPSYG-YPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQ 518
P PP P PP +PP P PPPPAP P P P PPP S
Sbjct: 222 PSPPSPRPPPRRPPFPPPSPPPPRPPPPAPPPPRPPPPSPPPPLPPPPSPPPPLPPPPSP 281
Query: 517 PRATNP---PLPPA 485
P + P PLPP+
Sbjct: 282 PPPSPPPPSPLPPS 295
Score = 45.4 bits (106), Expect = 7e-04
Identities = 32/73 (43%), Positives = 36/73 (48%), Gaps = 3/73 (4%)
Frame = -1
Query: 700 SMPPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVP---PPPSD 530
S PP P P+ PPS PP + PP PPP+P S PS P S P P PPPS
Sbjct: 151 SPPPSPPPSPPPS---PP--PSPPPSPPPSPPPS-PPPSPPPRPPPSPPPSPPPSPPPSP 204
Query: 529 NQSQPRATNPPLP 491
P + NPP P
Sbjct: 205 PPRPPPSPNPPSP 217
Score = 45.1 bits (105), Expect = 0.001
Identities = 26/69 (37%), Positives = 27/69 (38%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQP 515
PPPP P PP PP P P PP P P P P PPPP P
Sbjct: 66 PPPPPPPPPP----PPQPPLPPSPSPPPPPPPPVPPPPPPPPPPPPPPSPPPPPPPPPPP 121
Query: 514 RATNPPLPP 488
+ PP PP
Sbjct: 122 PPSPPPPPP 130
Score = 44.7 bits (104), Expect = 0.001
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQP 515
PPP P PP PP P P PP+P + P F P + P PPPP+ +P
Sbjct: 200 PPPSPPPRPPPSPNPPSPRP-PSPSPPSPRPPPRRPPF--PPPSPPPPRPPPPAPPPPRP 256
Query: 514 RATN--PPLPPASS 479
+ PPLPP S
Sbjct: 257 PPPSPPPPLPPPPS 270
Score = 44.3 bits (103), Expect = 0.002
Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -1
Query: 694 PPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQ--S 521
P PP P+ PPS PP PPP PP P +P P PPPPS
Sbjct: 217 PRPPSPS-PPSPRPPPRRPPFPPPSPPPPRPPPPAPP---------PPRPPPPSPPPPLP 266
Query: 520 QPRATNPPLPPASS 479
P + PPLPP S
Sbjct: 267 PPPSPPPPLPPPPS 280
Score = 42.0 bits (97), Expect = 0.008
Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Frame = -1
Query: 694 PPP--PQPTYPPSYGYPPYYNAVPPP----PPPAPVTSEQSPSFGNVPWASNPMVPPPPS 533
PPP P P PP PP + P PPP P P + P P VPPPP
Sbjct: 41 PPPGSPPPGTPPPGVPPPTPSGPEHPPPPPPPPPPPPQPPLPPSPSPPPPPPPPVPPPPP 100
Query: 532 DNQSQPRATNPPLPP 488
P +PP PP
Sbjct: 101 PPPPPPPPPSPPPPP 115
Score = 41.2 bits (95), Expect = 0.014
Identities = 28/81 (34%), Positives = 32/81 (38%), Gaps = 14/81 (17%)
Frame = -1
Query: 691 PPPQPT-------------YPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWAS-NP 554
PPP+P PPS PP PPP PP P +P P S P
Sbjct: 204 PPPRPPPSPNPPSPRPPSPSPPSPRPPPRRPPFPPPSPPPPRPPPPAPPPPRPPPPSPPP 263
Query: 553 MVPPPPSDNQSQPRATNPPLP 491
+PPPPS P +PP P
Sbjct: 264 PLPPPPSPPPPLPPPPSPPPP 284
Score = 35.0 bits (79), Expect = 1.0
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -1
Query: 694 PPPPQPTYP-PSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQ 518
PPPP+P P P+ PP + PP PPP P PPP +
Sbjct: 336 PPPPRPPPPSPNPPRPPPPSPSPPKPPPPP--------------------SPPPRPPRRP 375
Query: 517 PRATNPPLPPASSAG 473
PR PP P ++ G
Sbjct: 376 PR---PPRRPPTAPG 387
Score = 33.9 bits (76), Expect = 2.2
Identities = 24/78 (30%), Positives = 27/78 (33%), Gaps = 10/78 (12%)
Frame = -1
Query: 691 PPPQ----------PTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPP 542
PPP+ P PP PP PPP P + P P P PP
Sbjct: 24 PPPRRSPVVALVETPAAPPPGSPPP-----GTPPPGVPPPTPSGPEHPPPP----PPPPP 74
Query: 541 PPSDNQSQPRATNPPLPP 488
PP P + PP PP
Sbjct: 75 PPPQPPLPPSPSPPPPPP 92
>pir||S14970 extensin class I (clone w17-1) - tomato gi|1345531|emb|CAA39212.1|
extensin (class I) [Lycopersicon esculentum]
Length = 132
Score = 58.2 bits (139), Expect = 1e-07
Identities = 34/92 (36%), Positives = 40/92 (42%), Gaps = 23/92 (25%)
Frame = -1
Query: 694 PPPPQPTYPPSYGY-----------PPYYNAVPPPP------------PPAPVTSEQSPS 584
PPPP P+ PP Y Y PPYY PPPP PP P S P
Sbjct: 15 PPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPDPSPPPPY 74
Query: 583 FGNVPWASNPMVPPPPSDNQSQPRATNPPLPP 488
+ P +P PPPPS + P ++PP PP
Sbjct: 75 YYKSPPPPSPS-PPPPSPSPPPPTYSSPPPPP 105
Score = 49.3 bits (116), Expect = 5e-05
Identities = 34/80 (42%), Positives = 37/80 (45%), Gaps = 11/80 (13%)
Frame = -1
Query: 694 PPPPQPTYPPSYGY-----------PPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMV 548
PPPP P+ PP Y Y PPYY PPPP+P SPS P S+P
Sbjct: 47 PPPPSPSPPPPYYYKSPPPPDPSPPPPYY--YKSPPPPSPSPPPPSPS-PPPPTYSSP-- 101
Query: 547 PPPPSDNQSQPRATNPPLPP 488
PPPP P N PLPP
Sbjct: 102 PPPP------PFYENIPLPP 115
Score = 49.3 bits (116), Expect = 5e-05
Identities = 33/99 (33%), Positives = 39/99 (39%), Gaps = 23/99 (23%)
Frame = -1
Query: 688 PPQPTYPPSYGY-----------PPYYNAVPPPP------------PPAPVTSEQSPSFG 578
PP P+ PP Y Y PPYY PPPP PP P S P +
Sbjct: 1 PPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYY 60
Query: 577 NVPWASNPMVPPPPSDNQSQPRATNPPLPPASSAGDSEY 461
P +P PPPP +S P + P PP+ S Y
Sbjct: 61 KSPPPPDPS-PPPPYYYKSPPPPSPSPPPPSPSPPPPTY 98
Score = 40.4 bits (93), Expect = 0.024
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 694 PPPPQPTYPP-SYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPP 536
PPPP P+ PP S PP + PPPPPP P G V +AS PPPP
Sbjct: 79 PPPPSPSPPPPSPSPPPPTYSSPPPPPPFYENIPLPPVIG-VSYAS----PPPP 127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 683,063,011
Number of Sequences: 1393205
Number of extensions: 18702405
Number of successful extensions: 247188
Number of sequences better than 10.0: 5151
Number of HSP's better than 10.0 without gapping: 81278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157274
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
