Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000702A_C01 KMC000702A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52602 squamosa promoter binding protein 1 [imported] - Ara... 70 1e-11
ref|NP_182230.2| putative squamosa-promoter binding protein; pro... 70 1e-11
pir||T02180 probable squamosa-promoter binding protein [imported... 70 1e-11
ref|NP_191562.1| squamosa promoter binding protein-like 12; prot... 62 5e-09
dbj|BAA96636.1| unnamed protein product [Oryza sativa (japonica ... 52 5e-06
>pir||T52602 squamosa promoter binding protein 1 [imported] - Arabidopsis
thaliana gi|5931653|emb|CAB56580.1| squamosa promoter
binding protein-like 1 [Arabidopsis thaliana]
Length = 881
Score = 70.5 bits (171), Expect = 1e-11
Identities = 46/99 (46%), Positives = 54/99 (54%)
Frame = +3
Query: 117 GKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRGGQFFPPAPEFPAKTANLSSNLSASVNS 296
GKRS+EWDLNDWKWDGDLF A RG QFFP SSN S+S S
Sbjct: 19 GKRSVEWDLNDWKWDGDLFLA------TQTTRGRQFFP---------LGNSSNSSSSC-S 62
Query: 297 GEGKRELEKRRRGVTVRGEGEGDEGNDGNGSLNLNLGGQ 413
EG +K+RR V ++G D NG+L LNL G+
Sbjct: 63 DEGN---DKKRRAVAIQG--------DTNGALTLNLNGE 90
>ref|NP_182230.2| putative squamosa-promoter binding protein; protein id: At2g47070.1
[Arabidopsis thaliana] gi|25456637|pir||T52601 squamosa
promoter binding protein 1 [imported] - Arabidopsis
thaliana gi|3650274|emb|CAA09698.1| squamosa-promoter
binding protein-like 1 [Arabidopsis thaliana]
gi|5931655|emb|CAB56581.1| squamosa promoter binding
protein-like 1 [Arabidopsis thaliana]
Length = 881
Score = 70.5 bits (171), Expect = 1e-11
Identities = 46/99 (46%), Positives = 54/99 (54%)
Frame = +3
Query: 117 GKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRGGQFFPPAPEFPAKTANLSSNLSASVNS 296
GKRS+EWDLNDWKWDGDLF A RG QFFP SSN S+S S
Sbjct: 19 GKRSVEWDLNDWKWDGDLFLA------TQTTRGRQFFP---------LGNSSNSSSSC-S 62
Query: 297 GEGKRELEKRRRGVTVRGEGEGDEGNDGNGSLNLNLGGQ 413
EG +K+RR V ++G D NG+L LNL G+
Sbjct: 63 DEGN---DKKRRAVAIQG--------DTNGALTLNLNGE 90
>pir||T02180 probable squamosa-promoter binding protein [imported] - Arabidopsis
thaliana gi|3522939|gb|AAC34221.1| putative
squamosa-promoter binding protein [Arabidopsis thaliana]
Length = 240
Score = 70.5 bits (171), Expect = 1e-11
Identities = 46/99 (46%), Positives = 54/99 (54%)
Frame = +3
Query: 117 GKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRGGQFFPPAPEFPAKTANLSSNLSASVNS 296
GKRS+EWDLNDWKWDGDLF A RG QFFP SSN S+S S
Sbjct: 19 GKRSVEWDLNDWKWDGDLFLA------TQTTRGRQFFP---------LGNSSNSSSSC-S 62
Query: 297 GEGKRELEKRRRGVTVRGEGEGDEGNDGNGSLNLNLGGQ 413
EG +K+RR V ++G D NG+L LNL G+
Sbjct: 63 DEGN---DKKRRAVAIQG--------DTNGALTLNLNGE 90
>ref|NP_191562.1| squamosa promoter binding protein-like 12; protein id: At3g60030.1
[Arabidopsis thaliana] gi|11358858|pir||T47827 squamosa
promoter binding protein-like 12 [imported] -
Arabidopsis thaliana gi|6006395|emb|CAB56768.1| squamosa
promoter binding protein-like 12 [Arabidopsis thaliana]
gi|6006403|emb|CAB56769.1| squamosa promoter binding
protein-like 12 [Arabidopsis thaliana]
gi|7076756|emb|CAB75918.1| squamosa promoter binding
protein-like 12 [Arabidopsis thaliana]
gi|28392866|gb|AAO41870.1| putative squamosa promoter
binding protein 12 [Arabidopsis thaliana]
Length = 927
Score = 61.6 bits (148), Expect = 5e-09
Identities = 45/119 (37%), Positives = 59/119 (48%), Gaps = 5/119 (4%)
Frame = +3
Query: 69 RKESILYGPEMKGVGNGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRGGQFFPPAPEFP 248
R E + G ++ +GKRS+EWDLNDWKW+GDLF A LN
Sbjct: 4 RIEGEVEGHSLEYGFSGKRSVEWDLNDWKWNGDLFVATQLNH------------------ 45
Query: 249 AKTANLSSNLS--ASVNSGEGKR---ELEKRRRGVTVRGEGEGDEGNDGNGSLNLNLGG 410
++N SS S +V E +R E +K+RR VTV E + +D L LNLGG
Sbjct: 46 -GSSNSSSTCSDEGNVEIMERRRIEMEKKKKRRAVTVVAMEEDNLKDDDAHRLTLNLGG 103
>dbj|BAA96636.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 862
Score = 51.6 bits (122), Expect = 5e-06
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +3
Query: 111 GNGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDC 209
G K+ LEWDLNDW+WD +LF A P N+ PS C
Sbjct: 4 GLKKKGLEWDLNDWRWDSNLFLATPSNASPSKC 36
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,280,047
Number of Sequences: 1393205
Number of extensions: 12255229
Number of successful extensions: 48567
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 42795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47945
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
