Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000700A_C02 KMC000700A_c02
(669 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567718.1| putative protein; protein id: At4g25370.1, supp... 109 4e-23
pir||T10217 hypothetical protein T30C3.40 - Arabidopsis thaliana... 99 4e-20
ref|NP_567386.1| putative protein; protein id: At4g12060.1, supp... 87 2e-16
gb|AAM64734.1| unknown [Arabidopsis thaliana] 86 3e-16
pir||T06613 hypothetical protein F16J13.130 - Arabidopsis thalia... 85 1e-15
>ref|NP_567718.1| putative protein; protein id: At4g25370.1, supported by cDNA:
28122., supported by cDNA: gi_14334923, supported by
cDNA: gi_16323363 [Arabidopsis thaliana]
gi|14334924|gb|AAK59640.1| unknown protein [Arabidopsis
thaliana] gi|16323364|gb|AAL15176.1| unknown protein
[Arabidopsis thaliana] gi|21555497|gb|AAM63872.1|
unknown [Arabidopsis thaliana]
Length = 238
Score = 109 bits (272), Expect = 4e-23
Identities = 49/76 (64%), Positives = 66/76 (86%)
Frame = -1
Query: 669 HPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQILAGLGFNDEKAK 490
HPPLTEPA+KA+ WAIDEK KS +GE+ A+LLLG+WSQK+SAG+QIL LGFN++KAK
Sbjct: 160 HPPLTEPAQKAIAWAIDEKNKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAK 219
Query: 489 ELAKSVDGDIDLSYRR 442
E+ KS++ D+DLS+++
Sbjct: 220 EVEKSMNEDVDLSFKK 235
>pir||T10217 hypothetical protein T30C3.40 - Arabidopsis thaliana
gi|5123926|emb|CAB45514.1| putative protein [Arabidopsis
thaliana] gi|7269388|emb|CAB81348.1| putative protein
[Arabidopsis thaliana]
Length = 234
Score = 99.4 bits (246), Expect = 4e-20
Identities = 46/66 (69%), Positives = 57/66 (85%)
Frame = -1
Query: 669 HPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQILAGLGFNDEKAK 490
HPPLTEPA+KA+ WAIDEK KS +GE+ A+LLLG+WSQK+SAG+QIL LGFN++KAK
Sbjct: 160 HPPLTEPAQKAIAWAIDEKNKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAK 219
Query: 489 ELAKSV 472
E+ KSV
Sbjct: 220 EVEKSV 225
>ref|NP_567386.1| putative protein; protein id: At4g12060.1, supported by cDNA:
32461. [Arabidopsis thaliana]
gi|26453060|dbj|BAC43606.1| unknown protein [Arabidopsis
thaliana]
Length = 241
Score = 87.4 bits (215), Expect = 2e-16
Identities = 41/62 (66%), Positives = 51/62 (82%)
Frame = -1
Query: 669 HPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQILAGLGFNDEKAK 490
HPPLTE A++ALD A+D+ LK+GG GE+ AH+LLGIWS+ ES G +ILA LGF DEK+K
Sbjct: 168 HPPLTEDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSK 227
Query: 489 EL 484
EL
Sbjct: 228 EL 229
>gb|AAM64734.1| unknown [Arabidopsis thaliana]
Length = 241
Score = 86.3 bits (212), Expect = 3e-16
Identities = 40/62 (64%), Positives = 51/62 (81%)
Frame = -1
Query: 669 HPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQILAGLGFNDEKAK 490
HPPLT+ A++ALD A+D+ LK+GG GE+ AH+LLGIWS+ ES G +ILA LGF DEK+K
Sbjct: 168 HPPLTQDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSK 227
Query: 489 EL 484
EL
Sbjct: 228 EL 229
>pir||T06613 hypothetical protein F16J13.130 - Arabidopsis thaliana
gi|4586111|emb|CAB40947.1| putative protein [Arabidopsis
thaliana] gi|7267907|emb|CAB78249.1| putative protein
[Arabidopsis thaliana]
Length = 267
Score = 84.7 bits (208), Expect = 1e-15
Identities = 39/61 (63%), Positives = 50/61 (81%)
Frame = -1
Query: 669 HPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQILAGLGFNDEKAK 490
HPPLTE A++ALD A+D+ LK+GG GE+ AH+LLGIWS+ ES G +ILA LGF DEK+K
Sbjct: 168 HPPLTEDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSK 227
Query: 489 E 487
+
Sbjct: 228 D 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,218,375
Number of Sequences: 1393205
Number of extensions: 10541780
Number of successful extensions: 21456
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 20903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21446
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
