Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000696A_C01 KMC000696A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_587929.1| sorting nexin-like protein [Schizosaccharomyces... 37 0.15
gb|EAA18696.1| dynein beta chain, ciliary [Plasmodium yoelii yoe... 34 1.2
emb|CAB50913.1| transydroxylase alpha subunit [Pelobacter acidig... 32 4.7
ref|NP_683103.1| ORF_ID:tll2313~unknown protein [Thermosynechoco... 31 8.0
gb|AAH04576.1| Unknown (protein for IMAGE:3586510) [Mus musculus] 31 8.0
>ref|NP_587929.1| sorting nexin-like protein [Schizosaccharomyces pombe]
gi|13446210|emb|CAC34987.1| putative vacuolar sorting
protein; putative retromer subunit; possibly involved in
retrograde vesicle formation from the prevacuole;
sorting nexin family; similar to S. cerevisiae VPS5
[Schizosaccharomyces pombe]
Length = 576
Score = 37.0 bits (84), Expect = 0.15
Identities = 19/62 (30%), Positives = 36/62 (57%)
Frame = +1
Query: 52 LSSITVYREYHQQRKILQFNMRLLETIDH*LRKFI*GKNSLTM*KRIWMSLTNSARPVSQ 231
LS + V + Q+RK+ Q N+ L T++ +R KN+ T +++W + +S + VS+
Sbjct: 427 LSQLQVELRFVQERKVAQDNLTLGTTLEEYIRYVESAKNAFTTRQKLWQTWQSSVQAVSR 486
Query: 232 SK 237
+K
Sbjct: 487 AK 488
>gb|EAA18696.1| dynein beta chain, ciliary [Plasmodium yoelii yoelii]
Length = 5174
Score = 33.9 bits (76), Expect = 1.2
Identities = 15/52 (28%), Positives = 31/52 (58%)
Frame = +3
Query: 51 IIFYYSLQGISSTEEDITVQYETARDN*SLIKKIYIREKLLDNVKKDLDVPN 206
+IFYY L+ + +++ ++ E ++ IKK+ + + N+KK+LD+ N
Sbjct: 1061 LIFYYKLRYVCICKKEKELKDEFIKEEKESIKKLKLNYRKFANIKKNLDISN 1112
>emb|CAB50913.1| transydroxylase alpha subunit [Pelobacter acidigallici]
Length = 875
Score = 32.0 bits (71), Expect = 4.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 437 WKSSQSSPLSLSDQYPGYSEGGSIGD 360
W ++Q PL +PGY+EGG GD
Sbjct: 387 WSTTQGVPLDYEFYFPGYAEGGISGD 412
>ref|NP_683103.1| ORF_ID:tll2313~unknown protein [Thermosynechococcus elongatus BP-1]
gi|22296041|dbj|BAC09865.1| ORF_ID:tll2313~unknown
protein [Thermosynechococcus elongatus BP-1]
Length = 266
Score = 31.2 bits (69), Expect = 8.0
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 374 GSIGDS*ILNVKGLCFTISQHSTVPQGVLPKDFIIWCTQEGSDGL 240
GS+G + +++ L F SQ+ T P + F + C+Q G+DGL
Sbjct: 8 GSLGKT---DMRNLHFLASQYPTFPHKFIIPHFFVACSQFGADGL 49
>gb|AAH04576.1| Unknown (protein for IMAGE:3586510) [Mus musculus]
Length = 563
Score = 31.2 bits (69), Expect = 8.0
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 3/61 (4%)
Frame = +2
Query: 134 IID*ENLYKGKTP*QCE---KGFGCP*PTLQDQSLNQSKDHHFLLGCTKL*SLSAKLLEE 304
+I + ++ G+ P +C+ KGF C Q QS++ + H C K + +AKL++
Sbjct: 243 LIQHQRIHTGEKPYECDVCGKGFRCSTQLRQHQSIHTGEKPHRCSECGKGFTKNAKLIQH 302
Query: 305 Q 307
Q
Sbjct: 303 Q 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,563,360
Number of Sequences: 1393205
Number of extensions: 8083133
Number of successful extensions: 18007
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17959
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
