Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000694A_C01 KMC000694A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87509.1| immunoglobulin kappa light chain variable region ... 34 1.6
emb|CAA71843.1| mu-opioid receptor [Catostomus commersoni] 33 3.5
ref|NP_501679.1| 7TM receptor family member [Caenorhabditis eleg... 32 6.0
ref|NP_485664.1| unknown protein [Nostoc sp. PCC 7120] gi|253819... 32 7.9
>gb|AAL87509.1| immunoglobulin kappa light chain variable region [Trichosurus
vulpecula]
Length = 146
Score = 33.9 bits (76), Expect = 1.6
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 3/55 (5%)
Frame = +1
Query: 433 LIITGENGFLDPVQDRTRIYKRPPAEITSHCKFKN---HSNYHHHLHHFQLKPGE 588
L++ G +G + Q + P +T CK HSN H +LH Q KPG+
Sbjct: 14 LLVPGSSGDIVLTQSPASVSVTPGQRVTISCKASQSLKHSNGHTYLHWVQQKPGQ 68
>emb|CAA71843.1| mu-opioid receptor [Catostomus commersoni]
Length = 383
Score = 32.7 bits (73), Expect = 3.5
Identities = 24/122 (19%), Positives = 58/122 (46%), Gaps = 2/122 (1%)
Frame = -1
Query: 515 VISAGGRLYILVLS*TGSKKPFSPVMIRNSQCKVLYPSVHTWFSE*LLFVLFLHTYTNEH 336
++S+ L ++V++ T + SP+ + N C +L+P ++ L +F+ +
Sbjct: 182 ILSSAIGLPVMVMASTTIENQNSPLQVSNFDCTLLFPHPPWYWETLLKICVFILAFIMPV 241
Query: 335 WY--YCTSMRFRR*NSHHLRQLRLSVQALYPSINLSRISPIPPVHISAYILCYHIFYLFL 162
C + R L+ +R+ + NL RI+ + V ++ +I+C+ ++F+
Sbjct: 242 LIITVCYGLMILR-----LKSVRMLSGSKEKDRNLRRITRMVLVVVAVFIICWTPIHIFV 296
Query: 161 VM 156
++
Sbjct: 297 II 298
>ref|NP_501679.1| 7TM receptor family member [Caenorhabditis elegans]
gi|7496878|pir||T19663 hypothetical protein C33A12.10 -
Caenorhabditis elegans gi|3874670|emb|CAA92793.1| C.
elegans SRU-4 protein (corresponding sequence C33A12.10)
[Caenorhabditis elegans]
Length = 339
Score = 32.0 bits (71), Expect = 6.0
Identities = 21/67 (31%), Positives = 33/67 (48%), Gaps = 3/67 (4%)
Frame = -1
Query: 221 IPPVHISAYILCYHIFYLFLVMSFQFCNSVI*RLGIIVPFIM*SISVNTYKYNVSKIIS- 45
IPP H IL +++ +L MSF F VI + +I P I+ N K+ + I+
Sbjct: 108 IPPNHYLKIILVSALYFNYLAMSFPFLLPVIRLIIVICPKSHSKINTNIVKFAIPIILCF 167
Query: 44 --VYSFY 30
++FY
Sbjct: 168 PLCFTFY 174
>ref|NP_485664.1| unknown protein [Nostoc sp. PCC 7120] gi|25381986|pir||AB2009
hypothetical protein alr1624 [imported] - Nostoc sp.
(strain PCC 7120) gi|17135444|dbj|BAB77990.1|
ORF_ID:alr1624~unknown protein [Nostoc sp. PCC 7120]
Length = 102
Score = 31.6 bits (70), Expect = 7.9
Identities = 18/43 (41%), Positives = 21/43 (47%), Gaps = 5/43 (11%)
Frame = +1
Query: 454 GFLDPVQD-----RTRIYKRPPAEITSHCKFKNHSNYHHHLHH 567
G+L P +D R R Y P + SH K H YHHH HH
Sbjct: 32 GYLYPKRDSSYYYRERSYSYPQRDYPSHHYKKPH--YHHHRHH 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,789,819
Number of Sequences: 1393205
Number of extensions: 10121492
Number of successful extensions: 29652
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28469
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
