Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000692A_C02 KMC000692A_c02
(796 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174454.1| epsilon-adaptin, putative; protein id: At1g3173... 37 0.43
gb|AAM97035.1| putative epsilon-adaptin [Arabidopsis thaliana] g... 37 0.43
ref|NP_085082.1|ND2_15618 NADH dehydrogenase subunit 2 [Chrysomy... 34 2.2
gb|AAN63798.1|AF454501_17 Eps11O [Streptococcus thermophilus] 34 2.2
pir||A96808 hypothetical protein T32E8.13 [imported] - Arabidops... 33 6.3
>ref|NP_174454.1| epsilon-adaptin, putative; protein id: At1g31730.1 [Arabidopsis
thaliana] gi|12597828|gb|AAG60138.1|AC074360_3
epsilon-adaptin, putative [Arabidopsis thaliana]
Length = 933
Score = 36.6 bits (83), Expect = 0.43
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -1
Query: 796 MGVNPSSQNPNLFRDLLG 743
MGVNP+SQNP LF+DLLG
Sbjct: 916 MGVNPTSQNPTLFKDLLG 933
>gb|AAM97035.1| putative epsilon-adaptin [Arabidopsis thaliana]
gi|23198120|gb|AAN15587.1| putative epsilon-adaptin
[Arabidopsis thaliana]
Length = 938
Score = 36.6 bits (83), Expect = 0.43
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -1
Query: 796 MGVNPSSQNPNLFRDLLG 743
MGVNP+SQNP LF+DLLG
Sbjct: 921 MGVNPTSQNPTLFKDLLG 938
>ref|NP_085082.1|ND2_15618 NADH dehydrogenase subunit 2 [Chrysomya chloropyga]
gi|13384217|gb|AAK21318.1|AF352790_1 NADH subunit 2
[Chrysomya chloropyga]
Length = 338
Score = 34.3 bits (77), Expect = 2.2
Identities = 30/126 (23%), Positives = 58/126 (45%), Gaps = 6/126 (4%)
Frame = -2
Query: 402 SSLLLYPSTFCFLFFAPIFVHFHTAVYIMDFFP*MRSLVLRSY----PVWCMAFVNVKFL 235
SSLLL + F F+ P +M+ + +L+L ++ P+ ++++ K L
Sbjct: 96 SSLLLKSGSAPFHFWFP---------NVMEGLSWLNALILMTWQKIAPLMLISYIIFKPL 146
Query: 234 VINEFSYSFVEGQ--GPHDWLFQSFVAFKSLSLSCTMLMFRYSSRYLWF*YYLYIIHDHM 61
+I S + G G + + +A+ S++ ML Y+S LW Y+++
Sbjct: 147 IITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYSFLTF 206
Query: 60 SLVFHF 43
S++F F
Sbjct: 207 SMIFMF 212
>gb|AAN63798.1|AF454501_17 Eps11O [Streptococcus thermophilus]
Length = 394
Score = 34.3 bits (77), Expect = 2.2
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Frame = -2
Query: 495 VFLVESRFWSILRR*RVLSVISLLHFNGSPVSSLLLYPSTFCFLFFAPIFVHFHTAVYIM 316
VFL E + W +L+ + + S++H + S FC LF P F++ +M
Sbjct: 151 VFLFEGKKWWLLKYCCCILIASMIHLS-----------SIFCLLFILPKFINLKKLAKMM 199
Query: 315 DFFP*MRSLVLRSYPVWCMAF----VNVKFLVINEFSYSFVEGQGPHDWLFQSFVAFK-- 154
+ SL L + AF VN+ FL I + V + FQS + ++
Sbjct: 200 V----LLSLGLTVFTSLLTAFIDKLVNISFLNIGT-KLNIVLNASDLKYNFQSVMNYRVK 254
Query: 153 -SLSLSCTMLMFRYSSRYLW 97
L L C++++ Y Y+W
Sbjct: 255 MFLILGCSLIV--YYILYIW 272
>pir||A96808 hypothetical protein T32E8.13 [imported] - Arabidopsis thaliana
gi|12323292|gb|AAG51624.1|AC012193_6 putative phorbol
ester / diacylglycerol binding protein; 61157-67783
[Arabidopsis thaliana]
Length = 1506
Score = 32.7 bits (73), Expect = 6.3
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = -3
Query: 569 QELWLNQVKICSSCRIALVAIECMKCSSLNPGSGPFY---DAEGYCQ-SFHF--YTLMEV 408
+ +W N + +CSSC++A V I+C KC+ +GP+Y AE + SF+F
Sbjct: 1046 ETIW-NLIVVCSSCKVA-VHIDCYKCA--KESTGPWYCELCAESSSEPSFNFGEKPNSST 1101
Query: 407 QCHLCCYTQALF 372
+C LC T F
Sbjct: 1102 ECTLCGGTTGAF 1113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 677,719,560
Number of Sequences: 1393205
Number of extensions: 14577185
Number of successful extensions: 29367
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 28325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29345
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40055936206
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
