Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000691A_C01 KMC000691A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO51720.1| similar to Thermoanaerobacter tengcongensis. Unch... 37 0.17
gb|AAK92097.1|AF361947_1 SgcA [Dictyostelium discoideum] 36 0.29
gb|AAM34316.2| similar to Dictyostelium discoideum (Slime mold).... 36 0.29
gb|AAO52376.1| similar to Plasmodium falciparum. Hypothetical pr... 36 0.29
gb|AAL92309.2| similar to Dictyostelium discoideum (Slime mold).... 35 0.50
>gb|AAO51720.1| similar to Thermoanaerobacter tengcongensis. Uncharacterized ATPase
related to the helicase subunit of the holliday junction
resolvase [Dictyostelium discoideum]
Length = 876
Score = 37.0 bits (84), Expect = 0.17
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = +2
Query: 221 NNSNQ*SNNQGNNNVTTLQKPITTKTMTSLKSNSGARHN 337
NN+N +NN NNN +T KP TT T T+ +N+ +N
Sbjct: 130 NNNNNNNNNNNNNNSSTNVKPTTTTTTTTTINNNNNNNN 168
Score = 34.3 bits (77), Expect = 1.1
Identities = 14/39 (35%), Positives = 24/39 (60%)
Frame = +2
Query: 221 NNSNQ*SNNQGNNNVTTLQKPITTKTMTSLKSNSGARHN 337
NN+N +NN NN+ T ++ TT T T++ +N+ +N
Sbjct: 131 NNNNNNNNNNNNNSSTNVKPTTTTTTTTTINNNNNNNNN 169
>gb|AAK92097.1|AF361947_1 SgcA [Dictyostelium discoideum]
Length = 2843
Score = 36.2 bits (82), Expect = 0.29
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 200 ISIPS*QNNSNQ*SNNQGNNNVTTLQKPITTKTMTSLKSNSGARHN 337
IS P+ NN+N +NN NNN TT TT T T++ + + N
Sbjct: 804 ISSPNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTAITNTTDTVQN 849
>gb|AAM34316.2| similar to Dictyostelium discoideum (Slime mold). SgcA
Length = 2183
Score = 36.2 bits (82), Expect = 0.29
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 200 ISIPS*QNNSNQ*SNNQGNNNVTTLQKPITTKTMTSLKSNSGARHN 337
IS P+ NN+N +NN NNN TT TT T T++ + + N
Sbjct: 144 ISSPNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTAITNTTDTVQN 189
>gb|AAO52376.1| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 665
Score = 36.2 bits (82), Expect = 0.29
Identities = 19/58 (32%), Positives = 31/58 (52%), Gaps = 6/58 (10%)
Frame = +2
Query: 185 NAPALISIP------S*QNNSNQ*SNNQGNNNVTTLQKPITTKTMTSLKSNSGARHNL 340
NAP+ +SIP + NN+N +NN NNN+ + TT T T+ + ++N+
Sbjct: 12 NAPSFLSIPLLAHNNNINNNNNNINNNNNNNNINSNNNGTTTTTTTTTITTISYKNNI 69
>gb|AAL92309.2| similar to Dictyostelium discoideum (Slime mold).
Phosphatidylinositol 3-kinase 3 (EC 2.7.1.137)
(PI3-kinase) (PtdIns-3-kinase) (PI3K) (Fragment)
Length = 1603
Score = 35.4 bits (80), Expect = 0.50
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Frame = +2
Query: 221 NNSNQ*SNNQGNNNVTTLQKPITTKTMTSLKSNSGARH------NL*LAQMDQ 361
NN+N +NN NNN ++ P +K ++S S+ G+R NL LA+MD+
Sbjct: 994 NNNNNNNNNNNNNNNSSSTSPTNSKWVSSSSSSLGSRSELRQSWNLELAKMDK 1046
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,721,531
Number of Sequences: 1393205
Number of extensions: 10066184
Number of successful extensions: 61632
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 28215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51310
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
