Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000690A_C01 KMC000690A_c01
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188346.1| hypothetical protein; protein id: At3g17205.1 [... 216 3e-55
gb|AAM13201.1| unknown protein [Arabidopsis thaliana] 216 3e-55
ref|NP_055486.1| ubiquitin-protein isopeptide ligase (E3) [Homo ... 134 9e-31
gb|AAD51453.1|AC004975_1 hypothetical protein 1 [Homo sapiens] 134 9e-31
gb|AAH21525.1| Unknown (protein for IMAGE:5353408) [Mus musculus] 134 1e-30
>ref|NP_188346.1| hypothetical protein; protein id: At3g17205.1 [Arabidopsis thaliana]
Length = 873
Score = 216 bits (549), Expect = 3e-55
Identities = 100/125 (80%), Positives = 116/125 (92%)
Frame = -2
Query: 667 ISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEMLWEVLKGFSMENKKKFLKFVTGCSRGPL 488
ISGS+DSLD+DDLR +TNYAGGYH+ HYVI+M WEV+K FS EN+KKFLKFVTGCSRGPL
Sbjct: 749 ISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPL 808
Query: 487 LGFRYLEPLFCIQRAGGNASEEALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADA 308
LGF+YLEP FCIQRA G+AS E++DRLPTSATCMNLLKLPPY+SKE +ETKL+YAI+A+A
Sbjct: 809 LGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAISAEA 868
Query: 307 GFDLS 293
GFDLS
Sbjct: 869 GFDLS 873
>gb|AAM13201.1| unknown protein [Arabidopsis thaliana]
Length = 1029
Score = 216 bits (549), Expect = 3e-55
Identities = 100/125 (80%), Positives = 116/125 (92%)
Frame = -2
Query: 667 ISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEMLWEVLKGFSMENKKKFLKFVTGCSRGPL 488
ISGS+DSLD+DDLR +TNYAGGYH+ HYVI+M WEV+K FS EN+KKFLKFVTGCSRGPL
Sbjct: 905 ISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPL 964
Query: 487 LGFRYLEPLFCIQRAGGNASEEALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADA 308
LGF+YLEP FCIQRA G+AS E++DRLPTSATCMNLLKLPPY+SKE +ETKL+YAI+A+A
Sbjct: 965 LGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAISAEA 1024
Query: 307 GFDLS 293
GFDLS
Sbjct: 1025 GFDLS 1029
>ref|NP_055486.1| ubiquitin-protein isopeptide ligase (E3) [Homo sapiens]
gi|627468|pir||A38919 hypothetical protein 1 - human
gi|285983|dbj|BAA02799.1| KIAA0010 [Homo sapiens]
Length = 1083
Score = 134 bits (338), Expect = 9e-31
Identities = 65/125 (52%), Positives = 89/125 (71%)
Frame = -2
Query: 667 ISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEMLWEVLKGFSMENKKKFLKFVTGCSRGPL 488
ISG+ + ++DL+ TNY+GGY ++H VI++ W V++GF+ E K+K LKFVT CSR PL
Sbjct: 964 ISGAQVPISLEDLKSFTNYSGGYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPL 1023
Query: 487 LGFRYLEPLFCIQRAGGNASEEALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADA 308
LGF+ L P FCI G + L+RLPT++TCMNLLKLP + + + +KLLYAI A
Sbjct: 1024 LGFKELYPAFCIHNGGSD-----LERLPTASTCMNLLKLPEFYDETLLRSKLLYAIECAA 1078
Query: 307 GFDLS 293
GF+LS
Sbjct: 1079 GFELS 1083
>gb|AAD51453.1|AC004975_1 hypothetical protein 1 [Homo sapiens]
Length = 415
Score = 134 bits (338), Expect = 9e-31
Identities = 65/125 (52%), Positives = 89/125 (71%)
Frame = -2
Query: 667 ISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEMLWEVLKGFSMENKKKFLKFVTGCSRGPL 488
ISG+ + ++DL+ TNY+GGY ++H VI++ W V++GF+ E K+K LKFVT CSR PL
Sbjct: 296 ISGAQVPISLEDLKSFTNYSGGYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPL 355
Query: 487 LGFRYLEPLFCIQRAGGNASEEALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADA 308
LGF+ L P FCI G + L+RLPT++TCMNLLKLP + + + +KLLYAI A
Sbjct: 356 LGFKELYPAFCIHNGGSD-----LERLPTASTCMNLLKLPEFYDETLLRSKLLYAIECAA 410
Query: 307 GFDLS 293
GF+LS
Sbjct: 411 GFELS 415
>gb|AAH21525.1| Unknown (protein for IMAGE:5353408) [Mus musculus]
Length = 589
Score = 134 bits (337), Expect = 1e-30
Identities = 65/125 (52%), Positives = 89/125 (71%)
Frame = -2
Query: 667 ISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEMLWEVLKGFSMENKKKFLKFVTGCSRGPL 488
ISG+ + ++DL+ TNY+GGY ++H VI++ W V++GF+ E K+K LKFVT CSR PL
Sbjct: 470 ISGAQVPVSLEDLKSFTNYSGGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPL 529
Query: 487 LGFRYLEPLFCIQRAGGNASEEALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADA 308
LGF+ L P FCI G + L+RLPT++TCMNLLKLP + + + +KLLYAI A
Sbjct: 530 LGFKELYPAFCIHNGGSD-----LERLPTASTCMNLLKLPEFYDEALLRSKLLYAIECAA 584
Query: 307 GFDLS 293
GF+LS
Sbjct: 585 GFELS 589
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,042,976
Number of Sequences: 1393205
Number of extensions: 12608923
Number of successful extensions: 26543
Number of sequences better than 10.0: 324
Number of HSP's better than 10.0 without gapping: 25502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26290
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
