Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000689A_C01 KMC000689A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA09199.1| ebiP3674 [Anopheles gambiae str. PEST] 38 0.069
sp|Q38796|LUMI_ARATH Homeobox protein LUMINIDEPENDENS gi|424106|... 35 0.45
ref|NP_192165.1| LUMINIDEPENDENS protein; protein id: At4g02560.... 35 0.45
ref|NP_758518.1| polyprotein [Tomato black ring virus] gi|252473... 34 1.3
ref|XP_146617.2| similar to methionine synthase [Rattus norvegic... 34 1.3
>gb|EAA09199.1| ebiP3674 [Anopheles gambiae str. PEST]
Length = 1962
Score = 38.1 bits (87), Expect = 0.069
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = -1
Query: 547 SGSYDRNNDGSEGFETWSPENSPTRNPRYVPGRNFPESRMNNVRNPRHEWSRQ-RGSSGN 371
+ ++ NN G W+ +N G+N + N +N ++WS Q +GS+G
Sbjct: 299 NSQWNNNNQGQNSNNQWNNQNQ---------GQNNQWNNQNQGQNNNNQWSNQNQGSNGQ 349
Query: 370 WGPDRHGNQ---RWNDQRR 323
W G++ +WN+Q +
Sbjct: 350 WQNQNQGSEGSNQWNNQNQ 368
Score = 35.8 bits (81), Expect = 0.34
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = -1
Query: 547 SGSYDRNNDGSEGFETWSPENSPTRNPRYVPGRNFPESRMNNVRNPRHEWSRQ-RGSSGN 371
+G + N GSEG W+ +N G+N + N ++ ++W+ Q +G +
Sbjct: 347 NGQWQNQNQGSEGSNQWNNQNQ---------GQNQQWNNNNQGQSSNNQWNGQTQGQNNQ 397
Query: 370 WGPDRHG---NQRWNDQRR 323
W G N +WN+ +
Sbjct: 398 WSNQNQGQSSNNQWNNNNQ 416
Score = 34.7 bits (78), Expect = 0.77
Identities = 18/79 (22%), Positives = 34/79 (42%), Gaps = 4/79 (5%)
Frame = -1
Query: 547 SGSYDRNNDGSEGFETWSPENSPTRNPRYVPGRNFPESRMNNVRNPRHEWSRQ-RGSSGN 371
+ + N GS G W+ +N G+N + N +N ++W+ Q +G +
Sbjct: 275 NNQWQNQNQGSSGSNQWNNQNQ---------GQNSQWNNNNQGQNSNNQWNNQNQGQNNQ 325
Query: 370 WGPDRHG---NQRWNDQRR 323
W G N +W++Q +
Sbjct: 326 WNNQNQGQNNNNQWSNQNQ 344
Score = 32.3 bits (72), Expect = 3.8
Identities = 17/79 (21%), Positives = 32/79 (39%), Gaps = 4/79 (5%)
Frame = -1
Query: 547 SGSYDRNNDGSEGFETWSPENSPTRNPRYVPGRNFPESRMNNVRNPRHEWSRQ-RGSSGN 371
+ ++ N G W+ +N G+N S N +N ++WS + +G +
Sbjct: 419 NNQWNNQNQGQNSNNQWNNQNQ---------GQNNQWSNQNQGQNSNNQWSNENQGQNNQ 469
Query: 370 WGPDRHG---NQRWNDQRR 323
W G N +WN+ +
Sbjct: 470 WNNQNQGQNSNNQWNNNNQ 488
Score = 31.6 bits (70), Expect = 6.5
Identities = 14/75 (18%), Positives = 28/75 (36%)
Frame = -1
Query: 547 SGSYDRNNDGSEGFETWSPENSPTRNPRYVPGRNFPESRMNNVRNPRHEWSRQRGSSGNW 368
S + N G W+ +N G+N + N +N ++W+ Q +
Sbjct: 491 SSQWSNQNQGQNNNNQWNNQNQ---------GQNNQWNNQNQGQNSNNQWNNQNQGQSSQ 541
Query: 367 GPDRHGNQRWNDQRR 323
++ N +WN +
Sbjct: 542 NQGQNNNNQWNSNNQ 556
Score = 31.6 bits (70), Expect = 6.5
Identities = 17/79 (21%), Positives = 32/79 (39%), Gaps = 4/79 (5%)
Frame = -1
Query: 547 SGSYDRNNDGSEGFETWSPENSPTRNPRYVPGRNFPESRMNNVRNPRHEWSRQ-RGSSGN 371
+ ++ N G W+ N G++ S N +N ++W+ Q +G +
Sbjct: 467 NNQWNNQNQGQNSNNQWNNNNQ---------GQSSQWSNQNQGQNNNNQWNNQNQGQNNQ 517
Query: 370 WGPDRHG---NQRWNDQRR 323
W G N +WN+Q +
Sbjct: 518 WNNQNQGQNSNNQWNNQNQ 536
>sp|Q38796|LUMI_ARATH Homeobox protein LUMINIDEPENDENS gi|424106|gb|AAA19115.1| mutant
phenotype: late flowering
Length = 953
Score = 35.4 bits (80), Expect = 0.45
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 541 SYDRNND---GSEGFETWSPENSPTRNPRYVPGRNFPESRMNNVRNPRHEWSRQRGSSGN 371
SY N+ + G+E+WSP+NSP+RN N+R + + SR+ SS +
Sbjct: 897 SYQGNSQYMSSNPGYESWSPDNSPSRN-------------QLNMRGQQQQASRKHDSSTH 943
Query: 370 WGPDRHGNQRW 338
P + N+RW
Sbjct: 944 --PYWNQNKRW 952
>ref|NP_192165.1| LUMINIDEPENDENS protein; protein id: At4g02560.1, supported by cDNA:
gi_424105 [Arabidopsis thaliana] gi|7484975|pir||T01093
luminidependens protein - Arabidopsis thaliana
gi|2262149|gb|AAC78261.1|AAC78261 LUMINIDEPENDENS protein
[Arabidopsis thaliana] gi|7269016|emb|CAB80749.1|
LUMINIDEPENDENS protein [Arabidopsis thaliana]
Length = 953
Score = 35.4 bits (80), Expect = 0.45
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 541 SYDRNND---GSEGFETWSPENSPTRNPRYVPGRNFPESRMNNVRNPRHEWSRQRGSSGN 371
SY N+ + G+E+WSP+NSP+RN N+R + + SR+ SS +
Sbjct: 897 SYQGNSQYMSSNPGYESWSPDNSPSRN-------------QLNMRGQQQQASRKHDSSTH 943
Query: 370 WGPDRHGNQRW 338
P + N+RW
Sbjct: 944 --PYWNQNKRW 952
>ref|NP_758518.1| polyprotein [Tomato black ring virus] gi|25247364|gb|AAN72831.1|
polyprotein [Tomato black ring virus]
Length = 1343
Score = 33.9 bits (76), Expect = 1.3
Identities = 14/26 (53%), Positives = 17/26 (64%)
Frame = -1
Query: 415 NPRHEWSRQRGSSGNWGPDRHGNQRW 338
NP HEW + GS+GNWG R N +W
Sbjct: 188 NPLHEWVLEEGSAGNWG-RRCQNWKW 212
>ref|XP_146617.2| similar to methionine synthase [Rattus norvegicus] [Mus musculus]
Length = 346
Score = 33.9 bits (76), Expect = 1.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 338 PPLVPMPVRAPVSRRTPLP*PFMSRISYIIHSGLWEISTWNIPRISSGTI 487
PP+VP P + P P P P M + ++ W IST PR+S T+
Sbjct: 249 PPVVPAPPKVPAVPAPPTPQPNMVPVQFLCLRNHWGIST--PPRLSYSTL 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,185,955
Number of Sequences: 1393205
Number of extensions: 11163285
Number of successful extensions: 38060
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37996
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
