Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000688A_C01 KMC000688A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_152203.1| hypothetical protein XP_152203 [Mus musculus] 33 3.0
ref|XP_151519.1| hypothetical protein XP_151519 [Mus musculus] 32 5.0
ref|XP_195898.1| hypothetical protein XP_195898 [Mus musculus] 32 6.6
>ref|XP_152203.1| hypothetical protein XP_152203 [Mus musculus]
Length = 277
Score = 32.7 bits (73), Expect = 3.0
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -2
Query: 483 LLEEFANPEEQKLIEDQGHQKR--RKKLKTGTVLPCPINP 370
+L+ NP E KL++D+ H+KR R+ T T LP + P
Sbjct: 90 ILKNQVNPTEAKLMKDKPHKKRNLREDSTTSTALPATLTP 129
>ref|XP_151519.1| hypothetical protein XP_151519 [Mus musculus]
Length = 359
Score = 32.0 bits (71), Expect = 5.0
Identities = 17/54 (31%), Positives = 27/54 (49%)
Frame = -1
Query: 430 PPEKEEKAENGHCSSMPN*PQIHQQRCSGFLGLLSYPGVITCFWYASLVRWLLC 269
P +++++ + H S N +IH C+ L S+ ITC W S + W LC
Sbjct: 167 PNKQQDEVQGFHASEPRNLVKIHNTECTECDTLRSFMAFITCPWQNSSL-WPLC 219
>ref|XP_195898.1| hypothetical protein XP_195898 [Mus musculus]
Length = 100
Score = 31.6 bits (70), Expect = 6.6
Identities = 26/90 (28%), Positives = 37/90 (40%), Gaps = 6/90 (6%)
Frame = -2
Query: 534 LVVMXIYLVDSSLYSLPLLEEFANPEEQKLIEDQGHQ------KRRKKLKTGTVLPCPIN 373
+V++ L+ Y L L + ++ LIE Q KR++K K TVL C
Sbjct: 14 IVLVLFVLIYGLCYCLKLCVKVVKTGQKILIEQQESMSEEKGLKRKRKKKGDTVLSCGQE 73
Query: 372 PRFTSSGVADFWDC*VTQESSLVFGMPPLC 283
R + V +E L F PPLC
Sbjct: 74 GRNKRAE--------VEEEGELAFAPPPLC 95
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,513,885
Number of Sequences: 1393205
Number of extensions: 10143766
Number of successful extensions: 27300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27291
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
