Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000687A_C01 KMC000687A_c01
(671 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P82412|RRP3_SPIOL Plastid-specific 30S ribosomal protein 3, c... 185 6e-46
ref|NP_564934.1| expressed protein; protein id: At1g68590.1, sup... 171 6e-42
gb|AAM63350.1| plastid-specific ribosomal protein 3 precursor [A... 171 8e-42
ref|NP_197080.1| ribosomal protein 3 precursor-like protein; pro... 160 2e-38
emb|CAD40991.1| OSJNBa0072F16.15 [Oryza sativa (japonica cultiva... 157 9e-38
>sp|P82412|RRP3_SPIOL Plastid-specific 30S ribosomal protein 3, chloroplast precursor
(PSRP-3) gi|7578871|gb|AAF64163.1|AF239218_1
plastid-specific ribosomal protein 3 precursor [Spinacia
oleracea]
Length = 179
Score = 185 bits (469), Expect = 6e-46
Identities = 100/159 (62%), Positives = 113/159 (70%), Gaps = 1/159 (0%)
Frame = +3
Query: 18 LTLSPIKFNTSSSFSSHSHSHSHSHSHLCPSNPSRFRLAVSAAETPSAAVAVAEQD-DTS 194
L+L P F T + + S S S L N + L V+ A+ E D D
Sbjct: 24 LSLKP--FKTPAFANPKPFFSSPSFSQLKKKN--NWSLFVAPETISDVAIMGNEVDIDDD 79
Query: 195 LSPPPQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKDAWE 374
L +KL V+VKP DKPRLVLKFIWMEKNIG+ALDQ +PGHGT+PLSPYYFWPRKDAWE
Sbjct: 80 LLVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWE 139
Query: 375 ELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLS 491
ELK LLE+KPWISQKQMIILLNQATDIINLWQQSGGNL+
Sbjct: 140 ELKVLLENKPWISQKQMIILLNQATDIINLWQQSGGNLA 178
>ref|NP_564934.1| expressed protein; protein id: At1g68590.1, supported by cDNA:
21798. [Arabidopsis thaliana]
gi|28380141|sp|Q9SX22|RR31_ARATH Plastid-specific 30S
ribosomal protein 3-1, chloroplast precursor (PSRP-3 1)
gi|25367488|pir||C96710 hypothetical protein F24J5.17
[imported] - Arabidopsis thaliana
gi|5734719|gb|AAD49984.1|AC008075_17 ESTs gb|H37416,
gb|T21163, gb|T76138 and gb|AA651329 come from this
gene. [Arabidopsis thaliana] gi|28393198|gb|AAO42029.1|
unknown protein [Arabidopsis thaliana]
gi|28827558|gb|AAO50623.1| unknown protein [Arabidopsis
thaliana]
Length = 166
Score = 171 bits (434), Expect = 6e-42
Identities = 86/129 (66%), Positives = 101/129 (77%)
Frame = +3
Query: 105 PSNPSRFRLAVSAAETPSAAVAVAEQDDTSLSPPPQKLGVVVKPTDKPRLVLKFIWMEKN 284
P + R + ++A ET +A DTS + P Q + VV KP +K R+VLKF+WMEKN
Sbjct: 39 PISVKRKIITLAAPETLTAETVTGI--DTSDNTPQQTIKVV-KPDEKSRVVLKFVWMEKN 95
Query: 285 IGIALDQAVPGHGTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATDIINL 464
IG+ LDQ VPGHGTIPLSPY+FWPRKDAWEELK LE+KPWISQK+MIILLNQATDIINL
Sbjct: 96 IGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINL 155
Query: 465 WQQSGGNLS 491
WQQSGGNL+
Sbjct: 156 WQQSGGNLT 164
>gb|AAM63350.1| plastid-specific ribosomal protein 3 precursor [Arabidopsis
thaliana]
Length = 166
Score = 171 bits (433), Expect = 8e-42
Identities = 86/129 (66%), Positives = 100/129 (76%)
Frame = +3
Query: 105 PSNPSRFRLAVSAAETPSAAVAVAEQDDTSLSPPPQKLGVVVKPTDKPRLVLKFIWMEKN 284
P + R + ++A ET +A DTS PQ+ VVKP +K R+VLKF+WMEKN
Sbjct: 39 PISVKRKIITLAAPETLTAETVTGI--DTS-DNTPQQTTKVVKPDEKSRVVLKFVWMEKN 95
Query: 285 IGIALDQAVPGHGTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATDIINL 464
IG+ LDQ VPGHGTIPLSPY+FWPRKDAWEELK LE+KPWISQK+MIILLNQATDIINL
Sbjct: 96 IGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINL 155
Query: 465 WQQSGGNLS 491
WQQSGGNL+
Sbjct: 156 WQQSGGNLT 164
>ref|NP_197080.1| ribosomal protein 3 precursor-like protein; protein id: At5g15760.1
[Arabidopsis thaliana] gi|28380137|sp|Q9LFV0|RR32_ARATH
Plastid-specific 30S ribosomal protein 3-2, chloroplast
precursor (PSRP-3 2) gi|11358770|pir||T51405 ribosomal
protein 3-like protein F14F8.140 [imported] -
Arabidopsis thaliana gi|9755621|emb|CAC01775.1|
ribosomal protein 3 precursor-like protein [Arabidopsis
thaliana] gi|26450781|dbj|BAC42499.1| putative ribosomal
protein 3 precursor [Arabidopsis thaliana]
gi|28372914|gb|AAO39939.1| At5g15760 [Arabidopsis
thaliana]
Length = 183
Score = 160 bits (404), Expect = 2e-38
Identities = 74/115 (64%), Positives = 92/115 (79%), Gaps = 2/115 (1%)
Frame = +3
Query: 153 PSAAVAVAEQDDTSLSPP--PQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGT 326
P + + + + S SPP +K+ V+VKP +KP++VLKF+WM+K+IG+ALD +PG GT
Sbjct: 69 PPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGT 128
Query: 327 IPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLS 491
IPLSPYYFWPRKDAWEELK LLESKPWIS+ + LLNQATDIINLWQ SGG+LS
Sbjct: 129 IPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183
>emb|CAD40991.1| OSJNBa0072F16.15 [Oryza sativa (japonica cultivar-group)]
Length = 183
Score = 157 bits (398), Expect = 9e-38
Identities = 82/125 (65%), Positives = 88/125 (69%), Gaps = 8/125 (6%)
Frame = +3
Query: 141 AAETPSAAVAVAEQD--------DTSLSPPPQKLGVVVKPTDKPRLVLKFIWMEKNIGIA 296
AA S AV E + D S Q+ V V P LVLKFIWMEKNIGIA
Sbjct: 58 AAAAASGAVEAEEGEEEKQVGGGDASAGEEAQEYKVKVPERQDPMLVLKFIWMEKNIGIA 117
Query: 297 LDQAVPGHGTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATDIINLWQQS 476
LDQ VPG+G+IPLSPYYFWPRKDAWEEL+ LE K WISQKQMIILLNQATDIINLWQQ
Sbjct: 118 LDQLVPGYGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQG 177
Query: 477 GGNLS 491
GG+LS
Sbjct: 178 GGSLS 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,421,420
Number of Sequences: 1393205
Number of extensions: 12801258
Number of successful extensions: 71902
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 54806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67221
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
