Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000686A_C02 KMC000686A_c02
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia] 176 2e-43
pir||T04823 hypothetical protein F10M23.340 - Arabidopsis thalia... 174 6e-43
ref|NP_567764.1| RNA binding protein 45 (RBP45), putative; prote... 173 1e-42
gb|AAG59664.1|AC084319_22 putative RNA binding protein [Oryza sa... 166 2e-40
dbj|BAC56019.1| putative RNA Binding Protein 45 [Oryza sativa (j... 160 1e-38
>emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia]
Length = 409
Score = 176 bits (446), Expect = 2e-43
Identities = 87/125 (69%), Positives = 96/125 (76%), Gaps = 1/125 (0%)
Frame = -1
Query: 614 LDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVR 435
LDP V ++HLRQVF YG+LVHVKI GKRCGFVQF R+ AE+AL LNGT LGGQ++R
Sbjct: 289 LDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIR 348
Query: 434 LSWGRSPSNKQTQSDPSQWNNSAGGAGYYGYAQGYENYGYAPAGQDPNMYAG-YPGYANY 258
LSWGRSPS+KQT D +QW S G YYGY QGYE YGYAP QDPNMY G YPGYANY
Sbjct: 349 LSWGRSPSSKQT--DQTQWGGS--GGAYYGYGQGYEAYGYAPPAQDPNMYYGNYPGYANY 404
Query: 257 QPAQQ 243
Q QQ
Sbjct: 405 QQPQQ 409
Score = 36.2 bits (82), Expect = 0.35
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = -1
Query: 596 DDHLRQVFGLYGDLVHVKIPQGKRCG------FVQFADRSCAEEALRVLNGTLLGG--QN 441
+++L F G+LV K+ + K+ G F++F + AE L+ NGTL+ QN
Sbjct: 97 ENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQN 156
Query: 440 VRLSW 426
R++W
Sbjct: 157 FRMNW 161
>pir||T04823 hypothetical protein F10M23.340 - Arabidopsis thaliana
gi|4455223|emb|CAB36546.1| putative DNA binding protein
[Arabidopsis thaliana] gi|7269553|emb|CAB79555.1|
putative DNA binding protein [Arabidopsis thaliana]
Length = 427
Score = 174 bits (442), Expect = 6e-43
Identities = 91/144 (63%), Positives = 107/144 (74%), Gaps = 6/144 (4%)
Frame = -1
Query: 614 LDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVR 435
+D +VT+D L+ VFG +G+LVHVKIP GKRCGFVQ+A+R+CAE+AL VLNGT LGGQ++R
Sbjct: 285 VDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIR 344
Query: 434 LSWGRSPSNKQTQSDPSQWNNSAGGAGYYGY-AQGYENYGYAPAGQDPN-MYAGYP--GY 267
LSWGRSPSNKQTQ D +Q+ GG GYYGY QGYE YGYAP QDPN Y GY GY
Sbjct: 345 LSWGRSPSNKQTQPDQAQY---GGGGGYYGYPPQGYEAYGYAPPPQDPNAYYGGYAGGGY 401
Query: 266 ANYQP--AQQQQQQPQQMGYPVEI 201
NYQ QQQQQ G+ + I
Sbjct: 402 GNYQQPGGYQQQQQVTFFGFYLNI 425
Score = 40.4 bits (93), Expect = 0.019
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Frame = -1
Query: 617 NLDPNVTDDHLRQVFGLYGDLVHVKIPQGKR------CGFVQFADRSCAEEALRVLNGTL 456
+L P + +++L VFGL G+ K+ + K+ GF++F + + AE L+ NG
Sbjct: 86 DLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAP 145
Query: 455 L--GGQNVRLSWGRSPSNKQTQSD 390
+ Q RL+W + + ++ Q++
Sbjct: 146 MPSSEQAFRLNWAQLGAGERRQAE 169
Score = 38.1 bits (87), Expect = 0.092
Identities = 27/95 (28%), Positives = 45/95 (46%), Gaps = 7/95 (7%)
Frame = -1
Query: 617 NLDPNVTDDHLRQVF-GLYGDLVHVKIP------QGKRCGFVQFADRSCAEEALRVLNGT 459
+L P+VTD L + F +Y + K+ + K GFV+FAD S A+ +NG
Sbjct: 179 DLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238
Query: 458 LLGGQNVRLSWGRSPSNKQTQSDPSQWNNSAGGAG 354
+ +R G + + K P+ + N+ G +G
Sbjct: 239 YCSSRPMRT--GPAANKKPLTMQPASYQNTQGNSG 271
>ref|NP_567764.1| RNA binding protein 45 (RBP45), putative; protein id: At4g27000.1,
supported by cDNA: gi_13878152, supported by cDNA:
gi_15450813, supported by cDNA: gi_17104568, supported
by cDNA: gi_20259887 [Arabidopsis thaliana]
gi|13878153|gb|AAK44154.1|AF370339_1 putative DNA
binding protein [Arabidopsis thaliana]
gi|15450814|gb|AAK96678.1| putative DNA binding protein
[Arabidopsis thaliana] gi|17104569|gb|AAL34173.1|
putative DNA binding protein [Arabidopsis thaliana]
gi|20259888|gb|AAM13291.1| putative DNA binding protein
[Arabidopsis thaliana]
Length = 415
Score = 173 bits (439), Expect = 1e-42
Identities = 89/133 (66%), Positives = 103/133 (76%), Gaps = 5/133 (3%)
Frame = -1
Query: 614 LDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVR 435
+D +VT+D L+ VFG +G+LVHVKIP GKRCGFVQ+A+R+CAE+AL VLNGT LGGQ++R
Sbjct: 285 VDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIR 344
Query: 434 LSWGRSPSNKQTQSDPSQWNNSAGGAGYYGY-AQGYENYGYAPAGQDPN-MYAGYP--GY 267
LSWGRSPSNKQTQ D +Q+ GG GYYGY QGYE YGYAP QDPN Y GY GY
Sbjct: 345 LSWGRSPSNKQTQPDQAQY---GGGGGYYGYPPQGYEAYGYAPPPQDPNAYYGGYAGGGY 401
Query: 266 ANY-QPAQQQQQQ 231
NY QP QQQQ
Sbjct: 402 GNYQQPGGYQQQQ 414
Score = 40.4 bits (93), Expect = 0.019
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Frame = -1
Query: 617 NLDPNVTDDHLRQVFGLYGDLVHVKIPQGKR------CGFVQFADRSCAEEALRVLNGTL 456
+L P + +++L VFGL G+ K+ + K+ GF++F + + AE L+ NG
Sbjct: 86 DLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAP 145
Query: 455 L--GGQNVRLSWGRSPSNKQTQSD 390
+ Q RL+W + + ++ Q++
Sbjct: 146 MPSSEQAFRLNWAQLGAGERRQAE 169
Score = 38.1 bits (87), Expect = 0.092
Identities = 27/95 (28%), Positives = 45/95 (46%), Gaps = 7/95 (7%)
Frame = -1
Query: 617 NLDPNVTDDHLRQVF-GLYGDLVHVKIP------QGKRCGFVQFADRSCAEEALRVLNGT 459
+L P+VTD L + F +Y + K+ + K GFV+FAD S A+ +NG
Sbjct: 179 DLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238
Query: 458 LLGGQNVRLSWGRSPSNKQTQSDPSQWNNSAGGAG 354
+ +R G + + K P+ + N+ G +G
Sbjct: 239 YCSSRPMRT--GPAANKKPLTMQPASYQNTQGNSG 271
>gb|AAG59664.1|AC084319_22 putative RNA binding protein [Oryza sativa]
Length = 402
Score = 166 bits (421), Expect = 2e-40
Identities = 84/132 (63%), Positives = 100/132 (75%), Gaps = 4/132 (3%)
Frame = -1
Query: 614 LDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVR 435
LDP+VTD+ L+Q F YG+LV+VKIP GKRCGFVQ+++R+ AEEA+R+LNG+ LGGQ++R
Sbjct: 275 LDPSVTDEVLKQAFSPYGELVYVKIPVGKRCGFVQYSNRASAEEAIRMLNGSQLGGQSIR 334
Query: 434 LSWGRSPSNKQTQSDPSQWNNSAGGAGYYGY-AQGYENYGYAPAGQDPNM--YAGYPGYA 264
LSWGRSP NKQ Q D +QWN AGYYGY QGY+ YGY QDP M YA YPGY
Sbjct: 335 LSWGRSPGNKQPQQDQNQWN-----AGYYGYPPQGYDPYGYVRPPQDPAMYAYAAYPGYG 389
Query: 263 NY-QPAQQQQQQ 231
NY QPA QQ Q
Sbjct: 390 NYQQPAPQQPPQ 401
>dbj|BAC56019.1| putative RNA Binding Protein 45 [Oryza sativa (japonica
cultivar-group)]
Length = 502
Score = 160 bits (405), Expect = 1e-38
Identities = 84/139 (60%), Positives = 99/139 (70%), Gaps = 8/139 (5%)
Frame = -1
Query: 614 LDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVR 435
LD NV +DHL+QVF YG++ +VKIP GKRCGFVQF RS AEEA+RVLNG+ +GGQ VR
Sbjct: 339 LDSNVNEDHLKQVFTPYGEIGYVKIPLGKRCGFVQFTSRSSAEEAIRVLNGSQIGGQQVR 398
Query: 434 LSWGRSPSNKQT-QSDPSQWNNSAGGAGYYGYAQGYENYGY-APAGQDPNM--YAGYPGY 267
LSWGR+P NKQ Q D +QWN + YYGY QGY++ Y AP QDP+ Y GY GY
Sbjct: 399 LSWGRTPQNKQAPQQDANQWNGN-----YYGYQQGYDSSYYGAPNAQDPSAQNYYGYSGY 453
Query: 266 ANY----QPAQQQQQQPQQ 222
NY +P QQQQQ PQQ
Sbjct: 454 GNYEQQQEPPQQQQQPPQQ 472
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 607,289,423
Number of Sequences: 1393205
Number of extensions: 14830971
Number of successful extensions: 82473
Number of sequences better than 10.0: 1475
Number of HSP's better than 10.0 without gapping: 52157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73498
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
