Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000685A_C01 KMC000685A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_207463.1| similar to CD59B [Mus musculus] 32 5.0
emb|CAA63806.1| hypothetical protein [Zymomonas mobilis] 32 8.6
ref|NP_041834.1| early protein [Human papillomavirus type 49] gi... 32 8.6
>ref|XP_207463.1| similar to CD59B [Mus musculus]
Length = 214
Score = 32.3 bits (72), Expect = 5.0
Identities = 22/71 (30%), Positives = 39/71 (53%)
Frame = -3
Query: 590 LELVLILLMIT*EVPMMLKSYIVTLLIFLIDMSLSLTIHLLLFQVISYYL*LMLQHWCRS 411
L L+L+LL++ + ++L ++ LL+ L+ + L L + LLL ++ L L+L C
Sbjct: 49 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLCSC 108
Query: 410 YEACMF*CHCS 378
+C C CS
Sbjct: 109 SCSCSCSCSCS 119
Score = 32.0 bits (71), Expect = 6.6
Identities = 22/71 (30%), Positives = 39/71 (53%)
Frame = -3
Query: 590 LELVLILLMIT*EVPMMLKSYIVTLLIFLIDMSLSLTIHLLLFQVISYYL*LMLQHWCRS 411
L L+L+LL++ + ++L ++ LL+ L+ + L L + LLL ++ L L+L C
Sbjct: 51 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLCSCSC 110
Query: 410 YEACMF*CHCS 378
+C C CS
Sbjct: 111 SCSCSCSCSCS 121
>emb|CAA63806.1| hypothetical protein [Zymomonas mobilis]
Length = 143
Score = 31.6 bits (70), Expect = 8.6
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 268 YPSPTEQNCSTAS*YNRTHFSVGSGCEKNCFCTSHHKLQ*HQ 393
+PS T++ C T N THF V G +K C S H L+ H+
Sbjct: 25 WPSLTQEECITDGDKNATHFGVFVG-DKLSGCASFHHLEGHK 65
>ref|NP_041834.1| early protein [Human papillomavirus type 49]
gi|549231|sp|P36729|VE1_HPV49 REPLICATION PROTEIN E1
gi|480237|pir||S36569 E1 protein - human papillomavirus
type 49 gi|397033|emb|CAA52581.1| early protein [Human
papillomavirus type 49]
Length = 609
Score = 31.6 bits (70), Expect = 8.6
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -2
Query: 573 TSNDNLRSSYDAKILYSYIAYFSYRYE--FKLDNTP 472
TSN N++++ K LYS IA F ++++ FK D TP
Sbjct: 525 TSNYNIKANDKYKFLYSRIAIFEFKHKFPFKEDGTP 560
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,705,537
Number of Sequences: 1393205
Number of extensions: 8482727
Number of successful extensions: 20637
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20628
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
