Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000684A_C01 KMC000684A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA10132.1| superoxide dismutase [Cicer arietinum] gi|389213... 123 1e-27
pir||JW0084 superoxide dismutase (EC 1.15.1.1) (Cu-Zn) - soybean 121 4e-27
sp|O65768|SODC_CARPA Superoxide dismutase [Cu-Zn] gi|7433319|pir... 119 2e-26
sp|Q43779|SOD2_LYCES Superoxide dismutase [Cu-Zn] 2 gi|1084402|p... 117 5e-26
sp|P14830|SOD1_LYCES Superoxide dismutase [Cu-Zn] 1 gi|100254|pi... 117 5e-26
>emb|CAA10132.1| superoxide dismutase [Cicer arietinum] gi|3892130|emb|CAA10160.1|
superoxide dismutase [Cicer arietinum]
Length = 152
Score = 123 bits (309), Expect = 1e-27
Identities = 59/61 (96%), Positives = 60/61 (97%)
Frame = -3
Query: 493 GTTSFSITDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 314
GT SFSITD+QIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ
Sbjct: 92 GTVSFSITDNQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151
Query: 313 G 311
G
Sbjct: 152 G 152
>pir||JW0084 superoxide dismutase (EC 1.15.1.1) (Cu-Zn) - soybean
Length = 152
Score = 121 bits (304), Expect = 4e-27
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = -3
Query: 493 GTTSFSITDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 314
GT SFSITDSQIPLTGPNSIIGRAVVVHAD DDLGKGGHELSKTTGNAGGRVACGIIGLQ
Sbjct: 92 GTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151
Query: 313 G 311
G
Sbjct: 152 G 152
>sp|O65768|SODC_CARPA Superoxide dismutase [Cu-Zn] gi|7433319|pir||T09778 superoxide
dismutase (EC 1.15.1.1) (Cu-Zn) - papaya
gi|3201501|emb|CAA73929.1| copper/zinc-superoxide
dismutase [Carica papaya]
Length = 152
Score = 119 bits (298), Expect = 2e-26
Identities = 56/61 (91%), Positives = 58/61 (94%)
Frame = -3
Query: 493 GTTSFSITDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 314
G SFSI DSQIPLTGPNSI+GRAVVVHADPDDLGKGGHELSKTTGNAGGRVACG+IGLQ
Sbjct: 92 GKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQ 151
Query: 313 G 311
G
Sbjct: 152 G 152
>sp|Q43779|SOD2_LYCES Superoxide dismutase [Cu-Zn] 2 gi|1084402|pir||S55402 superoxide
dismutase (EC 1.15.1.1) (Cu-Zn), cytosolic - tomato
gi|854248|emb|CAA60826.1| cytosolic Cu,Zn superoxide
dismutase [Lycopersicon esculentum]
Length = 152
Score = 117 bits (294), Expect = 5e-26
Identities = 55/61 (90%), Positives = 58/61 (94%)
Frame = -3
Query: 493 GTTSFSITDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 314
GT SF+ITD QIPLTGP SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACGIIGLQ
Sbjct: 92 GTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQ 151
Query: 313 G 311
G
Sbjct: 152 G 152
>sp|P14830|SOD1_LYCES Superoxide dismutase [Cu-Zn] 1 gi|100254|pir||S08350 superoxide
dismutase (EC 1.15.1.1) (Cu-Zn) - tomato
gi|19197|emb|CAA32199.1| Cu-Zn superoxide dismutase (AA
1-152) [Lycopersicon esculentum]
gi|170512|gb|AAA34194.1| superoxide dismutase (SOD)
Length = 152
Score = 117 bits (294), Expect = 5e-26
Identities = 55/61 (90%), Positives = 58/61 (94%)
Frame = -3
Query: 493 GTTSFSITDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 314
GT SF+ITD QIPLTGP SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACGIIGLQ
Sbjct: 92 GTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQ 151
Query: 313 G 311
G
Sbjct: 152 G 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,910,455
Number of Sequences: 1393205
Number of extensions: 8396106
Number of successful extensions: 26946
Number of sequences better than 10.0: 391
Number of HSP's better than 10.0 without gapping: 25647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26853
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
