Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000683A_C01 KMC000683A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_518168.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solan... 25 0.84
gb|AAF86199.1|AF238885_2 VrrB [Bacillus anthracis] 27 2.5
ref|XP_230694.1| similar to hypothetical protein FLJ38281 [Homo ... 33 2.7
gb|AAF86214.1| VrrB [Bacillus anthracis] 27 3.6
gb|AAF86213.1| VrrB [Bacillus anthracis] 27 3.7
>ref|NP_518168.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
gi|17427055|emb|CAD13575.1| CONSERVED HYPOTHETICAL
PROTEIN [Ralstonia solanacearum]
Length = 362
Score = 25.4 bits (54), Expect(3) = 0.84
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 498 NHDQDYKSNXEDXLECDKTHEGSHIHN 418
+HD ++ N +CD HE H H+
Sbjct: 224 DHDHGHEHNHACSPDCDHDHEHGHDHH 250
Score = 25.4 bits (54), Expect(3) = 0.84
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 249 HHGLTIMVTSHGHQAHHGH 193
HHG HGH HHGH
Sbjct: 250 HHG-------HGHHHHHGH 261
Score = 20.8 bits (42), Expect(3) = 0.84
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3
Query: 287 HGHQAHQGH 261
HGH H GH
Sbjct: 245 HGHDHHHGH 253
>gb|AAF86199.1|AF238885_2 VrrB [Bacillus anthracis]
Length = 265
Score = 27.3 bits (59), Expect(2) = 2.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 249 HHGLTIMVTSHGHQAHHGHLVRH 181
HHG HGHQ HH H H
Sbjct: 137 HHGHHHHQGHHGHQGHHHHQGHH 159
Score = 24.3 bits (51), Expect(2) = 2.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 341 ISVPQSGLDTN*PIIVTNHGHQAHQGH 261
+ V G+ +I +HGH HQGH
Sbjct: 96 VGVVAGGIGGFPQVIHGHHGHHHHQGH 122
>ref|XP_230694.1| similar to hypothetical protein FLJ38281 [Homo sapiens] [Rattus
norvegicus]
Length = 405
Score = 32.7 bits (73), Expect = 2.7
Identities = 16/56 (28%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Frame = -2
Query: 303 NHCH*SWPSSPSRSLDKTHH-GLTIMVTSHGHQAHHGHLVRHLCYASQLSKQLTDL 139
N C ++P+ PS + KT H G + +H H H V +C S + K + ++
Sbjct: 314 NQCVKAFPNQPSLQIHKTTHTGEKLFECNHFHHHESTHTVEKVCECSNVEKPICNM 369
>gb|AAF86214.1| VrrB [Bacillus anthracis]
Length = 133
Score = 27.3 bits (59), Expect(2) = 3.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 249 HHGLTIMVTSHGHQAHHGHLVRH 181
HHG HGHQ HH H H
Sbjct: 35 HHGHHHHQGHHGHQGHHHHQGHH 57
Score = 23.9 bits (50), Expect(2) = 3.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 302 IIVTNHGHQAHQGH 261
+I +HGH HQGH
Sbjct: 7 VIHGHHGHHHHQGH 20
>gb|AAF86213.1| VrrB [Bacillus anthracis]
Length = 130
Score = 27.3 bits (59), Expect(2) = 3.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 249 HHGLTIMVTSHGHQAHHGHLVRH 181
HHG HGHQ HH H H
Sbjct: 35 HHGHHHHQGHHGHQGHHHHQGHH 57
Score = 23.9 bits (50), Expect(2) = 3.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 302 IIVTNHGHQAHQGH 261
+I +HGH HQGH
Sbjct: 7 VIHGHHGHHHHQGH 20
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,352,827
Number of Sequences: 1393205
Number of extensions: 9422165
Number of successful extensions: 21944
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21532
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
