Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000682A_C01 KMC000682A_c01
(676 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565845.1| F-box protein family, AtFBL11; protein id: At2g... 54 1e-06
ref|ZP_00030315.1| hypothetical protein [Burkholderia fungorum] 33 4.6
>ref|NP_565845.1| F-box protein family, AtFBL11; protein id: At2g36370.1 [Arabidopsis
thaliana] gi|20197935|gb|AAM15321.1| F-box protein
family, AtFBL11 [Arabidopsis thaliana]
Length = 785
Score = 54.3 bits (129), Expect = 1e-06
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Frame = -1
Query: 676 EGDFDIPNYADR-HFLSTLKIARCKSQRCAFNLPDIAPRGRRRS-VHVETLVLVWNSRGL 503
EG FD+P + LS +KI+RCKS RC+ GRR + +H ETLV++WN + L
Sbjct: 725 EGGFDVPEEKEEGRSLSIVKISRCKSDRCSL--------GRRAAPMHRETLVMLWNGQTL 776
Query: 502 IRTVVKERL 476
+T++K+RL
Sbjct: 777 TKTLLKQRL 785
>ref|ZP_00030315.1| hypothetical protein [Burkholderia fungorum]
Length = 268
Score = 32.7 bits (73), Expect = 4.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 84 HLLWPPPWCEESVRNHDAFS 25
H +W PP CE SVR+H FS
Sbjct: 65 HAIWIPPHCEHSVRSHGPFS 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,302,664
Number of Sequences: 1393205
Number of extensions: 11756639
Number of successful extensions: 24309
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24303
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
