Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000679A_C01 KMC000679A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB01660.1| putative RNA helicase A 109 3e-23
gb|AAC20715.2| hypothetical protein [Arabidopsis thaliana] 109 3e-23
pir||H84712 hypothetical protein At2g30800 [imported] - Arabidop... 109 3e-23
dbj|BAC10766.1| putative DEIH-box RNA/DNA helicase [Oryza sativa... 102 4e-21
pir||E86201 protein F12K11.4 [imported] - Arabidopsis thaliana g... 83 3e-15
>gb|AAB01660.1| putative RNA helicase A
Length = 1291
Score = 109 bits (273), Expect = 3e-23
Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 8/168 (4%)
Frame = +2
Query: 164 ESTRLRFSQILEQFCDSNDEVFKFDANLSNMERALVHQLSRKMGLKSKSHGTGNARRIFV 343
E+TR+ ++++E F S +EV+ F+ NLSN ER ++HQ+ RKMG++SKS G G RR+ +
Sbjct: 19 EATRIWATKVIEDFRASGNEVYTFEHNLSNNERGVIHQMCRKMGIQSKSSGRGEQRRLSI 78
Query: 344 QKF------GKMVDRDNGPEKLPHFTFSQEANWVLSDLFTHYPPGDGRSWDMIGENNDGA 505
K + + EKL +F A+ +L +LFTHYPP DG + G
Sbjct: 79 FKSRHKNGNKNEANEKSNKEKLKCVSFPPGADVILQELFTHYPPCDGDTAATSFTKYSGN 138
Query: 506 DSRR-QNKDDIFARPSMSKAEIAKRLQSLGSNTTADN-LKQITKNRSK 643
++ Q KDD F +P +S EI +++ SL S D LK+ITK RSK
Sbjct: 139 KGKQGQWKDDFFRKPQISSEEILEKVASLSSRLKKDKALKEITKLRSK 186
>gb|AAC20715.2| hypothetical protein [Arabidopsis thaliana]
Length = 204
Score = 109 bits (273), Expect = 3e-23
Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 8/168 (4%)
Frame = +2
Query: 164 ESTRLRFSQILEQFCDSNDEVFKFDANLSNMERALVHQLSRKMGLKSKSHGTGNARRIFV 343
E+TR+ ++++E F S +EV+ F+ NLSN ER ++HQ+ RKMG++SKS G G RR+ +
Sbjct: 19 EATRIWATKVIEDFRASGNEVYTFEHNLSNNERGVIHQMCRKMGIQSKSSGRGEQRRLSI 78
Query: 344 QKF------GKMVDRDNGPEKLPHFTFSQEANWVLSDLFTHYPPGDGRSWDMIGENNDGA 505
K + + EKL +F A+ +L +LFTHYPP DG + G
Sbjct: 79 FKSRHKNGNKNEANEKSNKEKLKCVSFPPGADVILQELFTHYPPCDGDTAATSFTKYSGN 138
Query: 506 DSRR-QNKDDIFARPSMSKAEIAKRLQSLGSNTTADN-LKQITKNRSK 643
++ Q KDD F +P +S EI +++ SL S D LK+ITK RSK
Sbjct: 139 KGKQGQWKDDFFRKPQISSEEILEKVASLSSRLKKDKALKEITKLRSK 186
>pir||H84712 hypothetical protein At2g30800 [imported] - Arabidopsis thaliana
Length = 206
Score = 109 bits (273), Expect = 3e-23
Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 8/168 (4%)
Frame = +2
Query: 164 ESTRLRFSQILEQFCDSNDEVFKFDANLSNMERALVHQLSRKMGLKSKSHGTGNARRIFV 343
E+TR+ ++++E F S +EV+ F+ NLSN ER ++HQ+ RKMG++SKS G G RR+ +
Sbjct: 19 EATRIWATKVIEDFRASGNEVYTFEHNLSNNERGVIHQMCRKMGIQSKSSGRGEQRRLSI 78
Query: 344 QKF------GKMVDRDNGPEKLPHFTFSQEANWVLSDLFTHYPPGDGRSWDMIGENNDGA 505
K + + EKL +F A+ +L +LFTHYPP DG + G
Sbjct: 79 FKSRHKNGNKNEANEKSNKEKLKCVSFPPGADVILQELFTHYPPCDGDTAATSFTKYSGN 138
Query: 506 DSRR-QNKDDIFARPSMSKAEIAKRLQSLGSNTTADN-LKQITKNRSK 643
++ Q KDD F +P +S EI +++ SL S D LK+ITK RSK
Sbjct: 139 KGKQGQWKDDFFRKPQISSEEILEKVASLSSRLKKDKALKEITKLRSK 186
>dbj|BAC10766.1| putative DEIH-box RNA/DNA helicase [Oryza sativa (japonica
cultivar-group)]
Length = 1211
Score = 102 bits (254), Expect = 4e-21
Identities = 58/157 (36%), Positives = 89/157 (55%), Gaps = 3/157 (1%)
Frame = +2
Query: 158 VDESTRLRFSQILEQFCDSNDEVFKFDANLSNMERALVHQLSRKMGLKSKSHGTGNAR-- 331
V E+T +R S++LE F S+ +V+KF+ +S ERA +H++ RKMG+ SKS G G R
Sbjct: 125 VREATLVRVSKVLEDFQASDAQVYKFEPGISKQERAAIHEMCRKMGMISKSSGNGERRCL 184
Query: 332 RIFVQKFGKMVDRDNGPEKLPHFTFSQEANWVLSDLFTHYPPGDGR-SWDMIGENNDGAD 508
++ +K + ++ + GP H FS EA VL DLF HYPP D + + ++D A
Sbjct: 185 SVYKRKQNQGLETEEGPS---HLGFSVEARNVLQDLFMHYPPDDAELNGHTVRNSSDKAV 241
Query: 509 SRRQNKDDIFARPSMSKAEIAKRLQSLGSNTTADNLK 619
+ D F RP++ K +I K+++ L S D K
Sbjct: 242 KIQWKPDGAFCRPALRKPDILKKVEMLASKIVQDRSK 278
>pir||E86201 protein F12K11.4 [imported] - Arabidopsis thaliana
gi|6692694|gb|AAF24828.1|AC007592_21 F12K11.4
[Arabidopsis thaliana]
Length = 1760
Score = 83.2 bits (204), Expect = 3e-15
Identities = 67/208 (32%), Positives = 95/208 (45%), Gaps = 42/208 (20%)
Frame = +2
Query: 98 KAMAKNKGKNKKKSYGHTLPVDESTRLRFSQILEQFCDSNDEVFKFDANLSNMERALVHQ 277
KAMAK KKK HT + E+T +++LE F S ++ + F+ L+N ER ++HQ
Sbjct: 167 KAMAK-----KKKDTKHTR-LCEATGAWATKVLEDFRASGNDSYVFEQQLTNSERGIIHQ 220
Query: 278 LSRKMGLKSKSHGTGNARRIFV-------------------------------------- 343
+ R MGL+SKS+G+G RR+ +
Sbjct: 221 MCRTMGLRSKSNGSGEERRLSLFKGDGISKSDKRRMYEARNQKEKEGDGISKSYSKHRYE 280
Query: 344 ---QKFGKMVDRDNGPEKLPHFTFSQEANWVLSDLFTHYPPGDG-RSWDMIGENNDGADS 511
QK G + P+KL +F EA VL DLFT YPP DG + +G G +
Sbjct: 281 TRFQKAGGIRKTRISPKKLKCVSFPPEAKAVLHDLFTRYPPCDGDTTGTSLGIYTTG-NV 339
Query: 512 RRQNKDDIFARPSMSKAEIAKRLQSLGS 595
KDD F +P M+K +I + SL S
Sbjct: 340 NSNWKDDFFKKPHMTKHDIENNVVSLSS 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,009,046
Number of Sequences: 1393205
Number of extensions: 12754510
Number of successful extensions: 36894
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 35588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36845
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
