Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000677A_C01 KMC000677A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC23031.1| WRKY-type DNA binding protein [Solanum tuberosum] 156 2e-37
emb|CAB97004.1| WRKY DNA binding protein [Solanum tuberosum] 156 2e-37
ref|NP_196812.1| WRKY family transcription factor; protein id: A... 151 5e-36
gb|AAM62478.1| putative WRKY-like transcriptional regulator prot... 139 2e-32
ref|NP_186846.1| WRKY family transcription factor; protein id: A... 139 2e-32
>dbj|BAC23031.1| WRKY-type DNA binding protein [Solanum tuberosum]
Length = 172
Score = 156 bits (394), Expect = 2e-37
Identities = 70/83 (84%), Positives = 77/83 (92%)
Frame = -1
Query: 533 VDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHHGCNVKKPVPRLTQDEGVVVTTYEGVHT 354
VDILDDGYRWRKYGQKAVKNNKFPRSYYRCTH GCNVKK V RL++DE VVVTTYEG+H+
Sbjct: 90 VDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDEEVVVTTYEGMHS 149
Query: 353 HPIEKTTDNFEHILNQMPIYTPF 285
HPI+K+TDNFEHIL+QM IYT F
Sbjct: 150 HPIDKSTDNFEHILSQMQIYTSF 172
>emb|CAB97004.1| WRKY DNA binding protein [Solanum tuberosum]
Length = 172
Score = 156 bits (394), Expect = 2e-37
Identities = 70/83 (84%), Positives = 77/83 (92%)
Frame = -1
Query: 533 VDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHHGCNVKKPVPRLTQDEGVVVTTYEGVHT 354
VDILDDGYRWRKYGQKAVKNNKFPRSYYRCTH GCNVKK V RL++DE VVVTTYEG+H+
Sbjct: 90 VDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDEEVVVTTYEGMHS 149
Query: 353 HPIEKTTDNFEHILNQMPIYTPF 285
HPI+K+TDNFEHIL+QM IYT F
Sbjct: 150 HPIDKSTDNFEHILSQMQIYTSF 172
>ref|NP_196812.1| WRKY family transcription factor; protein id: At5g13080.1,
supported by cDNA: gi_17980957 [Arabidopsis thaliana]
gi|9955552|emb|CAC05436.1| WRKY-like protein
[Arabidopsis thaliana]
gi|17980958|gb|AAL50784.1|AF452174_1 WRKY transcription
factor 75 [Arabidopsis thaliana]
gi|27311641|gb|AAO00786.1| WRKY-like protein
[Arabidopsis thaliana]
Length = 145
Score = 151 bits (381), Expect = 5e-36
Identities = 69/83 (83%), Positives = 75/83 (90%)
Frame = -1
Query: 533 VDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHHGCNVKKPVPRLTQDEGVVVTTYEGVHT 354
VDILDDGYRWRKYGQKAVKNNKFPRSYYRCT+ GCNVKK V RLT D+ VVVTTYEGVH+
Sbjct: 63 VDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHS 122
Query: 353 HPIEKTTDNFEHILNQMPIYTPF 285
HPIEK+T+NFEHIL QM IY+ F
Sbjct: 123 HPIEKSTENFEHILTQMQIYSSF 145
>gb|AAM62478.1| putative WRKY-like transcriptional regulator protein [Arabidopsis
thaliana]
Length = 147
Score = 139 bits (351), Expect = 2e-32
Identities = 63/87 (72%), Positives = 71/87 (81%)
Frame = -1
Query: 533 VDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHHGCNVKKPVPRLTQDEGVVVTTYEGVHT 354
VDILDDGYRWRKYGQKAVKNN FPRSYY+CT GC VKK V R DEGVVVTTY+GVHT
Sbjct: 61 VDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHT 120
Query: 353 HPIEKTTDNFEHILNQMPIYTPF*IQE 273
H ++K +DNF HIL QM I+ PF ++E
Sbjct: 121 HAVDKPSDNFHHILTQMHIFPPFCLKE 147
>ref|NP_186846.1| WRKY family transcription factor; protein id: At3g01970.1,
supported by cDNA: 1415., supported by cDNA: gi_16798359
[Arabidopsis thaliana]
gi|6091736|gb|AAF03448.1|AC010797_24 putative WRKY-like
transcriptional regulator protein [Arabidopsis thaliana]
gi|6513934|gb|AAF14838.1|AC011664_20 putative WRKY-like
transcriptional regulator protein [Arabidopsis thaliana]
gi|16798360|gb|AAL29428.1|AF426251_1 WRKY transcription
factor 45 [Arabidopsis thaliana]
gi|26451946|dbj|BAC43065.1| putative WRKY-like
transcriptional regulator protein [Arabidopsis thaliana]
Length = 147
Score = 139 bits (351), Expect = 2e-32
Identities = 63/87 (72%), Positives = 71/87 (81%)
Frame = -1
Query: 533 VDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHHGCNVKKPVPRLTQDEGVVVTTYEGVHT 354
VDILDDGYRWRKYGQKAVKNN FPRSYY+CT GC VKK V R DEGVVVTTY+GVHT
Sbjct: 61 VDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHT 120
Query: 353 HPIEKTTDNFEHILNQMPIYTPF*IQE 273
H ++K +DNF HIL QM I+ PF ++E
Sbjct: 121 HAVDKPSDNFHHILTQMHIFPPFCLKE 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,715,898
Number of Sequences: 1393205
Number of extensions: 10806115
Number of successful extensions: 28875
Number of sequences better than 10.0: 231
Number of HSP's better than 10.0 without gapping: 27254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28765
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
