Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000674A_C02 KMC000674A_c02
(701 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B84546 probable splicing factor [imported] - Arabidopsis th... 168 8e-41
ref|NP_565399.1| RRM-containing protein; protein id: At2g16940.1... 168 8e-41
gb|AAM62839.1| putative splicing factor [Arabidopsis thaliana] 168 8e-41
gb|AAM20703.1| putative splicing factor [Arabidopsis thaliana] 168 8e-41
emb|CAC10207.1| putative splicing factor [Cicer arietinum] 155 4e-37
>pir||B84546 probable splicing factor [imported] - Arabidopsis thaliana
Length = 600
Score = 168 bits (425), Expect = 8e-41
Identities = 80/111 (72%), Positives = 89/111 (80%)
Frame = -3
Query: 690 IPTATIPSVDTIGVPSECLMLKNMFDPKAETEPDFDLDIKEDVEAECSKFGKLKHIYVDK 511
IP D IGVPSECL+LKNMFDP ETE DFD DIKEDV+ ECSKFGKL HI+VDK
Sbjct: 488 IPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK 547
Query: 510 KSAGFVYLRFEATQAAIGAPRALHGRWFAGKMITASFMVPQSYEDRFPESR 358
S GFVYLRFE QAAIGA RALHGRWFAGKMITA++M ++YE +FPES+
Sbjct: 548 NSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFPESK 598
>ref|NP_565399.1| RRM-containing protein; protein id: At2g16940.1, supported by cDNA:
16224. [Arabidopsis thaliana] gi|20197280|gb|AAC64224.2|
putative splicing factor [Arabidopsis thaliana]
Length = 561
Score = 168 bits (425), Expect = 8e-41
Identities = 80/111 (72%), Positives = 89/111 (80%)
Frame = -3
Query: 690 IPTATIPSVDTIGVPSECLMLKNMFDPKAETEPDFDLDIKEDVEAECSKFGKLKHIYVDK 511
IP D IGVPSECL+LKNMFDP ETE DFD DIKEDV+ ECSKFGKL HI+VDK
Sbjct: 449 IPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK 508
Query: 510 KSAGFVYLRFEATQAAIGAPRALHGRWFAGKMITASFMVPQSYEDRFPESR 358
S GFVYLRFE QAAIGA RALHGRWFAGKMITA++M ++YE +FPES+
Sbjct: 509 NSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFPESK 559
>gb|AAM62839.1| putative splicing factor [Arabidopsis thaliana]
Length = 560
Score = 168 bits (425), Expect = 8e-41
Identities = 80/111 (72%), Positives = 89/111 (80%)
Frame = -3
Query: 690 IPTATIPSVDTIGVPSECLMLKNMFDPKAETEPDFDLDIKEDVEAECSKFGKLKHIYVDK 511
IP D IGVPSECL+LKNMFDP ETE DFD DIKEDV+ ECSKFGKL HI+VDK
Sbjct: 448 IPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK 507
Query: 510 KSAGFVYLRFEATQAAIGAPRALHGRWFAGKMITASFMVPQSYEDRFPESR 358
S GFVYLRFE QAAIGA RALHGRWFAGKMITA++M ++YE +FPES+
Sbjct: 508 NSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFPESK 558
>gb|AAM20703.1| putative splicing factor [Arabidopsis thaliana]
Length = 420
Score = 168 bits (425), Expect = 8e-41
Identities = 80/111 (72%), Positives = 89/111 (80%)
Frame = -3
Query: 690 IPTATIPSVDTIGVPSECLMLKNMFDPKAETEPDFDLDIKEDVEAECSKFGKLKHIYVDK 511
IP D IGVPSECL+LKNMFDP ETE DFD DIKEDV+ ECSKFGKL HI+VDK
Sbjct: 308 IPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK 367
Query: 510 KSAGFVYLRFEATQAAIGAPRALHGRWFAGKMITASFMVPQSYEDRFPESR 358
S GFVYLRFE QAAIGA RALHGRWFAGKMITA++M ++YE +FPES+
Sbjct: 368 NSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFPESK 418
>emb|CAC10207.1| putative splicing factor [Cicer arietinum]
Length = 392
Score = 155 bits (393), Expect = 4e-37
Identities = 71/101 (70%), Positives = 84/101 (82%)
Frame = -3
Query: 672 PSVDTIGVPSECLMLKNMFDPKAETEPDFDLDIKEDVEAECSKFGKLKHIYVDKKSAGFV 493
P V+ +GVPSECL+LKNMFDP ETEPDFDLDIKEDVE ECSK+G++KHIYVDK+SAGFV
Sbjct: 288 PVVEPVGVPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFV 347
Query: 492 YLRFEATQAAIGAPRALHGRWFAGKMITASFMVPQSYEDRF 370
YLRFE +A+ A RA+H RWFA ++ITA FM P YE +F
Sbjct: 348 YLRFETVEASSAAQRAMHMRWFARRLITAIFMQPHLYEAKF 388
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,517,572
Number of Sequences: 1393205
Number of extensions: 12975979
Number of successful extensions: 31795
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 29815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31502
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
