Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000672A_C02 KMC000672A_c02
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN17417.1| mRNA capping enzyme - like protein [Arabidopsis t... 94 1e-18
ref|NP_195749.1| mRNA capping enzyme - like protein; protein id:... 94 1e-18
ref|NP_198173.1| mRNA capping enzyme - like; protein id: At5g282... 68 7e-11
ref|NP_702032.1| mRNA capping enzyme, putative [Plasmodium falci... 49 4e-05
gb|EAA17075.1| mRNA capping enzyme, putative [Plasmodium yoelii ... 47 1e-04
>gb|AAN17417.1| mRNA capping enzyme - like protein [Arabidopsis thaliana]
gi|24899669|gb|AAN65049.1| mRNA capping enzyme - like
protein [Arabidopsis thaliana]
Length = 657
Score = 94.0 bits (232), Expect = 1e-18
Identities = 43/69 (62%), Positives = 53/69 (76%)
Frame = -3
Query: 581 WDSD*QKWIFKRVRTDKSTPNDFNTYKKVMQSIKDNITEDILLNEINEIIRLPMYADRIK 402
WD D + W R+R DK+TPND NT +KV++SI DNITE++LL EI EIIRLPMYADRI+
Sbjct: 589 WDKDKKVWFSMRIRVDKTTPNDINTARKVIKSINDNITEEVLLQEIREIIRLPMYADRIR 648
Query: 401 IDSQATHMK 375
DSQA +
Sbjct: 649 NDSQAARRR 657
>ref|NP_195749.1| mRNA capping enzyme - like protein; protein id: At5g01290.1
[Arabidopsis thaliana] gi|11358515|pir||T45969 mRNA
capping enzyme-like protein - Arabidopsis thaliana
gi|6759452|emb|CAB69857.1| mRNA capping enzyme-like
protein [Arabidopsis thaliana]
Length = 607
Score = 94.0 bits (232), Expect = 1e-18
Identities = 43/69 (62%), Positives = 53/69 (76%)
Frame = -3
Query: 581 WDSD*QKWIFKRVRTDKSTPNDFNTYKKVMQSIKDNITEDILLNEINEIIRLPMYADRIK 402
WD D + W R+R DK+TPND NT +KV++SI DNITE++LL EI EIIRLPMYADRI+
Sbjct: 539 WDKDKKVWFSMRIRVDKTTPNDINTARKVIKSINDNITEEVLLQEIREIIRLPMYADRIR 598
Query: 401 IDSQATHMK 375
DSQA +
Sbjct: 599 NDSQAARRR 607
>ref|NP_198173.1| mRNA capping enzyme - like; protein id: At5g28210.1 [Arabidopsis
thaliana] gi|5732432|gb|AAD49100.1|AF177535_4 contains
similarity to Pfam family PF01331 - mRNA capping enzyme;
score=24.3, E=1.3e-11, E=1 [Arabidopsis thaliana]
Length = 625
Score = 68.2 bits (165), Expect = 7e-11
Identities = 29/64 (45%), Positives = 46/64 (71%)
Frame = -3
Query: 581 WDSD*QKWIFKRVRTDKSTPNDFNTYKKVMQSIKDNITEDILLNEINEIIRLPMYADRIK 402
WD + + W+ R+R DKS PN T + V++ I+D++T+++LL EI EII LPMY +RI+
Sbjct: 550 WDKEKKVWVSLRIRVDKSKPNGIGTGRSVIKCIEDDLTKEVLLKEIKEIILLPMYVERIE 609
Query: 401 IDSQ 390
D++
Sbjct: 610 NDTK 613
>ref|NP_702032.1| mRNA capping enzyme, putative [Plasmodium falciparum 3D7]
gi|23497209|gb|AAN36756.1|AE014818_21 mRNA capping
enzyme, putative [Plasmodium falciparum 3D7]
Length = 520
Score = 49.3 bits (116), Expect = 4e-05
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = -3
Query: 560 WIFKRVRTDKSTPNDFNTYKKVMQSIKDNITEDILLNEIN 441
WI +++R DK+ PND +T KV+QSI DNIT D L+ EI+
Sbjct: 475 WIAQKIRFDKNIPNDISTLNKVIQSILDNITIDSLIKEIS 514
>gb|EAA17075.1| mRNA capping enzyme, putative [Plasmodium yoelii yoelii]
Length = 445
Score = 47.4 bits (111), Expect = 1e-04
Identities = 21/39 (53%), Positives = 27/39 (68%)
Frame = -3
Query: 560 WIFKRVRTDKSTPNDFNTYKKVMQSIKDNITEDILLNEI 444
WI +++R DK+ PND T KVM SI DNIT D L+ E+
Sbjct: 399 WIAQKIRYDKNIPNDIMTLNKVMHSILDNITIDTLIKEV 437
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,505,820
Number of Sequences: 1393205
Number of extensions: 8803201
Number of successful extensions: 18242
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 17732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18239
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
