Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000671A_C01 KMC000671A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10360.1| hypothetical protein~predicted by GeneMark.hmm e... 36 0.43
sp|Q91910|HNFB_XENLA Hepatocyte nuclear factor 1-beta (HNF-1B) (... 35 0.73
ref|NP_077901.1| putative ABC substrate-binding protein - iron [... 33 2.1
dbj|BAB61209.1| hypothetical protein~similar to Arabidopsis thal... 33 2.8
ref|NP_404141.1| hypothetical protein [Yersinia pestis] gi|22127... 32 4.7
>dbj|BAC10360.1| hypothetical protein~predicted by GeneMark.hmm etc. [Oryza sativa
(japonica cultivar-group)]
Length = 261
Score = 35.8 bits (81), Expect = 0.43
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 491 PISCCWDLWCCIYLGRIRGCRFCTIVTHGIILPASFRSFE 372
P SCC LWC ++ RIRG T+ + G + +R +
Sbjct: 28 PASCCCSLWCTMHASRIRGSDDATVASDGEMFYLGWRGLD 67
>sp|Q91910|HNFB_XENLA Hepatocyte nuclear factor 1-beta (HNF-1B) (LFB3) (XLFB3)
gi|2118502|pir||I51704 transcription factor HNF-1B -
African clawed frog gi|515329|emb|CAA53637.1| LFB3
[Xenopus laevis]
Length = 561
Score = 35.0 bits (79), Expect = 0.73
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 232 ATKMSNTGEKASLEGGSICSSLQPVLLPPGVHHQISYLPLQQINQNASKLLKLAGKIIP* 411
++ +S+ G A + S+ + PV G+ H S L KL+ ++G +P
Sbjct: 365 SSTISHHGNNAMVHSQSVLQQVSPV----GLDHSHSMLSPD------GKLISVSGGGLPP 414
Query: 412 VTMVQNLHPLILPKYMQHQRSQQQLIG--SGKLCI*YNVN 525
V+ + N+H L + HQ+SQ ++ SG + I N+N
Sbjct: 415 VSTLTNIHNLSQSVHHNHQQSQNLIMAPISGVMAITQNLN 454
>ref|NP_077901.1| putative ABC substrate-binding protein - iron [Ureaplasma
urealyticum] gi|11345916|pir||H82938 probable ABC
substrate-binding protein, iron UU071 [imported] -
Ureaplasma urealyticum
gi|6899021|gb|AAF30476.1|AE002106_10 putative ABC
substrate-binding protein - iron [Ureaplasma
urealyticum]
Length = 655
Score = 33.5 bits (75), Expect = 2.1
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -1
Query: 492 PNQLLLGSLVLHIFRKDKRM*ILYHSYSWNYFASKLQK 379
PN LL SL+L + KDK L Y+++YFA KL K
Sbjct: 204 PNSLLRKSLLLGLEYKDKEKGELNELYNYSYFADKLNK 241
>dbj|BAB61209.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 4,
F16G20.140 [Oryza sativa (japonica cultivar-group)]
gi|20804666|dbj|BAB92354.1| P0512C01.6 [Oryza sativa
(japonica cultivar-group)]
Length = 1002
Score = 33.1 bits (74), Expect = 2.8
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +3
Query: 255 RESLPRRRLYLLISSACAPPTWCTSSD*LPTSAA---NQSKCFKASEACWQNNSMSNYGT 425
RE LP + LL S A PP+ CTSS+ T A N S S+ C ++S ++ G
Sbjct: 77 REQLPSATVGLLPSDASPPPSICTSSN-FDTPAIVYNNPSFISTFSDPCQGSSSATSTGV 135
Query: 426 KST 434
+ST
Sbjct: 136 RST 138
>ref|NP_404141.1| hypothetical protein [Yersinia pestis] gi|22127551|ref|NP_670974.1|
hypothetical [Yersinia pestis KIM]
gi|25380202|pir||AH0061 hypothetical protein YPO0498
[imported] - Yersinia pestis (strain CO92)
gi|15978592|emb|CAC89355.1| hypothetical protein
[Yersinia pestis CO92]
gi|21960655|gb|AAM87225.1|AE013971_1 hypothetical
[Yersinia pestis KIM]
Length = 247
Score = 32.3 bits (72), Expect = 4.7
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 178 NSYPINIFINLKMTIHQKATKMSNTGEKASLEGGSICSSLQPVLLPPGVHHQ 333
NS P N+F +LK++ K+SNTG +++GG + + PGV HQ
Sbjct: 67 NSDPTNVFWSLKLSNRSVRVKLSNTG---NVKGGYTWGDMSNL---PGVKHQ 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,509,196
Number of Sequences: 1393205
Number of extensions: 10575799
Number of successful extensions: 28569
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28556
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
