Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000669A_C01 KMC000669A_c01
(878 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_050068.1| NH2 terminus uncertain [Leishmania tarentolae] ... 36 0.87
ref|NP_704836.1| hypothetical protein [Plasmodium falciparum 3D7... 35 1.5
ref|NP_704843.1| hypothetical protein [Plasmodium falciparum 3D7... 35 1.5
gb|EAA21600.1| sexual stage-specific protein kinase [Plasmodium ... 33 4.3
ref|NP_700938.1| hypothetical protein [Plasmodium falciparum 3D7... 33 5.7
>ref|NP_050068.1| NH2 terminus uncertain [Leishmania tarentolae] gi|83996|pir||B26696
hypothetical protein 1 (CYb-COII intergenic region) -
Leishmania tarentolae mitochondrion (fragment)
gi|896286|gb|AAA96601.1| NH2 terminus uncertain
Length = 443
Score = 35.8 bits (81), Expect = 0.87
Identities = 30/101 (29%), Positives = 45/101 (43%)
Frame = -2
Query: 571 FGFYLISFYSRKGYVFVNYINQ*LVLLVTNLSFIYLIFFCSINIHYVLIYIVYINCNSVK 392
F F + F S K Y+F Y+N L+ +LS I LI I Y + I Y
Sbjct: 268 FSFLFLIFISTKNYIFYMYLN---FHLIYSLSLIILIILYYFFIVYNMFDIKY------N 318
Query: 391 TNLMCLNYF*VSFFVSLFTLLQVLGAGTSSYNGSMTTIFNY 269
N +N+ SFF +L L+ ++ A GS+ +F +
Sbjct: 319 ENYFLINFIFFSFFNNL--LISIMIACIFLCIGSIPIVFGF 357
>ref|NP_704836.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505198|emb|CAD51979.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 558
Score = 35.0 bits (79), Expect = 1.5
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = -2
Query: 550 FYSRKGYVFVNYINQ*LVLLVTNLSFIYLIFFCSINIHYVLIYIVYINCNSVKTNLMCLN 371
FYS KG + NY + +L T + FI F I I YVL ++YI+ N ++CLN
Sbjct: 472 FYSLKGTLNFNYFS---LLFSTTVGFIS---FFLIYIKYVLQILIYIDNNFRTNKMLCLN 525
>ref|NP_704843.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505205|emb|CAD51986.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4530
Score = 35.0 bits (79), Expect = 1.5
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = -2
Query: 565 FYLISFYSRKGYVFVNYINQ*LVLLVTNLSFIYLIFF-----CSINIHYVLIYIVYI 410
F I ++ KGY+ + +N L F+ L+FF CS+N H L+Y+ YI
Sbjct: 2633 FVFIYYFFIKGYISLVLVNINRALKYFKKVFLLLLFFFGNPMCSLNSHPFLVYVTYI 2689
>gb|EAA21600.1| sexual stage-specific protein kinase [Plasmodium yoelii yoelii]
Length = 1138
Score = 33.5 bits (75), Expect = 4.3
Identities = 24/67 (35%), Positives = 32/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 434 IMNINATKKYQINERKIGHQQH*SLIDVVNKHISLSTIERNQIKTKAF-----*N*VTAR 598
I+NIN+ K Y+I E I+ +NK I++ I N I K F N +
Sbjct: 947 IININSIKSYKIEESNNYIIDMNKYIEYINKIITVLNININHISKKGFSINYMCNADKIK 1006
Query: 599 TSIHNIN 619
SIHNIN
Sbjct: 1007 VSIHNIN 1013
>ref|NP_700938.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496000|gb|AAN35662.1|AE014837_4 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 677
Score = 33.1 bits (74), Expect = 5.7
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 401 ITVDINNVDEYIMNINATKKYQINERKIGHQQH*SLIDVVNKHISLSTIERNQ 559
IT+ NNV ++I NIN KK E + + ++ L +N H+++ I++ Q
Sbjct: 422 ITIPNNNVIKHIQNINIKKKIHNIELLLNNFKNCKLNKNINSHVNVQEIKKKQ 474
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 709,131,305
Number of Sequences: 1393205
Number of extensions: 14795150
Number of successful extensions: 30077
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 28514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30056
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47382100290
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
