Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000665A_C01 KMC000665A_c01
(688 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB07976.1| Arabidopsis thaliana B' regulatory subunit of PP... 58 1e-07
ref|NP_187599.1| B' regulatory subunit of PP2A (AtB'beta); prote... 52 8e-06
emb|CAC85920.1| protein phosphatase 2A B'kappa subunit [Oryza sa... 51 1e-05
emb|CAB76153.1| putative B' regulatory subunit of PP2A [Oryza sa... 51 1e-05
ref|NP_197933.1| AtBgamma - like protein; protein id: At5g25510.... 51 2e-05
>dbj|BAB07976.1| Arabidopsis thaliana B' regulatory subunit of PP2A like protein
[Oryza sativa (japonica cultivar-group)]
gi|15289769|dbj|BAB63469.1| Arabidopsis thaliana B'
regulatory subunit of PP2A like protein [Oryza sativa
(japonica cultivar-group)]
Length = 463
Score = 57.8 bits (138), Expect = 1e-07
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = -1
Query: 685 NIKKMLSQMDEDLVLACQRKTEEEDSKSGAAAERRRLTWERLEAAAAAA 539
N+KKM MDE L+LACQ + E+ K A ERRRL WE+LE AAAA
Sbjct: 386 NVKKMFLDMDERLLLACQNNFQAEEEKRAATEERRRLMWEQLERNAAAA 434
>ref|NP_187599.1| B' regulatory subunit of PP2A (AtB'beta); protein id: At3g09880.1,
supported by cDNA: gi_18176454, supported by cDNA:
gi_21280991, supported by cDNA: gi_2160691 [Arabidopsis
thaliana] gi|2160692|gb|AAB58901.1| B' regulatory
subunit of PP2A [Arabidopsis thaliana]
gi|6681331|gb|AAF23248.1|AC015985_6 B' regulatory
subunit of PP2A (AtB'beta) [Arabidopsis thaliana]
gi|18176455|gb|AAL60047.1| putative B' regulatory
subunit of PP2A AtB'beta [Arabidopsis thaliana]
gi|21280992|gb|AAM44900.1| putative B' regulatory
subunit of PP2A AtB'beta [Arabidopsis thaliana]
Length = 499
Score = 52.0 bits (123), Expect = 8e-06
Identities = 28/60 (46%), Positives = 38/60 (62%)
Frame = -1
Query: 685 NIKKMLSQMDEDLVLACQRKTEEEDSKSGAAAERRRLTWERLEAAAAAAAASVQSLGGGE 506
NIKKM +MD +L CQR+ EE+ +KS E+R+ TW+RL A AA+ + GGGE
Sbjct: 438 NIKKMFMEMDPELFEECQRQYEEKQAKSKEVEEQRQYTWKRL-----AEAAAERDGGGGE 492
>emb|CAC85920.1| protein phosphatase 2A B'kappa subunit [Oryza sativa (japonica
cultivar-group)]
Length = 510
Score = 51.2 bits (121), Expect = 1e-05
Identities = 22/47 (46%), Positives = 34/47 (71%)
Frame = -1
Query: 685 NIKKMLSQMDEDLVLACQRKTEEEDSKSGAAAERRRLTWERLEAAAA 545
N+KKM S+MD+ L AC K +E++ + + +RRLTWE+LE+AA+
Sbjct: 439 NVKKMFSEMDDVLFSACLVKYKEDEERQASLESKRRLTWEKLESAAS 485
>emb|CAB76153.1| putative B' regulatory subunit of PP2A [Oryza sativa]
Length = 143
Score = 51.2 bits (121), Expect = 1e-05
Identities = 22/47 (46%), Positives = 34/47 (71%)
Frame = -1
Query: 685 NIKKMLSQMDEDLVLACQRKTEEEDSKSGAAAERRRLTWERLEAAAA 545
N+KKM S+MD+ L AC K +E++ + + +RRLTWE+LE+AA+
Sbjct: 72 NVKKMFSEMDDVLFSACLVKYKEDEERQASLESKRRLTWEKLESAAS 118
>ref|NP_197933.1| AtBgamma - like protein; protein id: At5g25510.1, supported by
cDNA: gi_16604606 [Arabidopsis thaliana]
gi|16604607|gb|AAL24096.1| putative AtBgamma protein
[Arabidopsis thaliana] gi|23296589|gb|AAN13126.1|
putative AtBgamma protein [Arabidopsis thaliana]
Length = 500
Score = 50.8 bits (120), Expect = 2e-05
Identities = 26/74 (35%), Positives = 43/74 (57%)
Frame = -1
Query: 685 NIKKMLSQMDEDLVLACQRKTEEEDSKSGAAAERRRLTWERLEAAAAAAAASVQSLGGGE 506
N++KM +MDE L ++C + +E+++K +AAE+R+ W RLE AA+ + G+
Sbjct: 433 NVRKMFCEMDEALFMSCHARFKEDEAKQCSAAEKRKEVWARLENAASMKPIT------GK 486
Query: 505 ILVPVKSATCSVAC 464
V V S+AC
Sbjct: 487 TAVLVTPRATSIAC 500
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 634,617,047
Number of Sequences: 1393205
Number of extensions: 14991990
Number of successful extensions: 49571
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 43683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48844
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
