Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000664A_C01 KMC000664A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK54095.1|AF362376_1 histidine kinase DhkK [Dictyostelium di... 35 0.46
ref|NP_797473.1| conserved hypothetical protein [Vibrio parahaem... 34 0.78
gb|AAM27466.1|AC099732_3 Putative bHLH transcription factor [Ory... 33 2.3
dbj|BAB11753.1| pepsinogen C [Suncus murinus] 32 3.0
gb|AAL91497.1|AF482390_1 ABC transporter AbcG11 [Dictyostelium d... 32 5.0
>gb|AAK54095.1|AF362376_1 histidine kinase DhkK [Dictyostelium discoideum]
Length = 1213
Score = 35.0 bits (79), Expect = 0.46
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Frame = -1
Query: 440 HTANPFMVLVDSLF-----QQHM*KRHNSLKYHLRSSQFAYQNRFHLLFQFPAQGLSKKQ 276
H F +L + LF QQ ++ N+L+Y ++ Q + H+ FQF + ++Q
Sbjct: 444 HLNENFDILQNDLFDIQQQQQQQQQQDNTLQYSSPINKRQEQEQQHIPFQFTTE---QQQ 500
Query: 275 *LQQEL*DPLQNRNLQLKLVMRRFHQLIRREEAKKK 168
LQQ+ LQN+ Q ++++R Q ++++ +++
Sbjct: 501 QLQQQQQQHLQNKTKQHPILLQRQQQQKQKQQQQQQ 536
>ref|NP_797473.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633] gi|28806081|dbj|BAC59357.1| conserved
hypothetical protein [Vibrio parahaemolyticus]
Length = 329
Score = 34.3 bits (77), Expect = 0.78
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +3
Query: 174 FCFFSSNQLMESPHHELKLKISVLEGI-LQLLLQLLFL**TLCRELKEKVKSVLICKL*T 350
F FF+++ M+S H+L+ +S+ I L L+L ++F L + ++ S L+ K+
Sbjct: 3 FFFFAADTYMDSVLHQLQFSLSITGPICLMLVLGVIFKRFGLINDNFIEIGSKLVFKVTL 62
Query: 351 PEVIFQGIVSFSHMLLEQTVY*DHKRVGSML 443
P ++F IV+ H + + ++ V S+L
Sbjct: 63 PAMLFVSIVASEHDFSAASGFINYGVVASIL 93
>gb|AAM27466.1|AC099732_3 Putative bHLH transcription factor [Oryza sativa (japonica
cultivar-group)]
Length = 451
Score = 32.7 bits (73), Expect = 2.3
Identities = 29/115 (25%), Positives = 46/115 (39%), Gaps = 11/115 (9%)
Frame = -3
Query: 477 YGXQQLPFHYFPAYCQPFYGL-------SRQFVPTAYVKKTQFPEISPQEFTVCIS---- 331
Y P + P++C F S F A KK Q + SP V
Sbjct: 189 YPASMAPNQFHPSHCSSFPAFGGSSALPSLAFGAVATTKKEQVQQPSPSSSNVLSFAGQV 248
Query: 330 EPISPSLSIPGTGFIKETVAATGVVRSPPEQKSSA*ARDEEIPSTD*KRRSKKEK 166
+ + +L G G+ ++ GV + PPE++S A +E + KRR K ++
Sbjct: 249 QGSTTTLDFSGRGWQQDD--GVGVFQQPPERRSRPPANAQEHVIAERKRREKLQQ 301
>dbj|BAB11753.1| pepsinogen C [Suncus murinus]
Length = 389
Score = 32.3 bits (72), Expect = 3.0
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = -3
Query: 453 HYFPAYCQPFYGLSRQFVPTAYVKKTQFPEIS----PQEFTVCISEPISPSLSIPGTGFI 286
HY PA F S + P AY+ + F EIS PQ F V + + S +L +P
Sbjct: 47 HYDPAQKYHFGDFSVAYEPMAYMDASYFGEISIGTPPQNFLV-LFDTGSSNLWVPSV--Y 103
Query: 285 KETVAATGVVRSPPEQKSS 229
++ A TG R P Q S+
Sbjct: 104 CQSQACTGHARFNPNQSST 122
>gb|AAL91497.1|AF482390_1 ABC transporter AbcG11 [Dictyostelium discoideum]
Length = 1441
Score = 31.6 bits (70), Expect = 5.0
Identities = 17/46 (36%), Positives = 22/46 (46%)
Frame = -3
Query: 429 PFYGLSRQFVPTAYVKKTQFPEISPQEFTVCISEPISPSLSIPGTG 292
PFYGL + F P+ + KKT +I T C + L PG G
Sbjct: 118 PFYGLVKLFTPSFWTKKTSTFDILHDVTTFCKDGEMVLVLGRPGAG 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,219,237
Number of Sequences: 1393205
Number of extensions: 7895334
Number of successful extensions: 18242
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18230
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
