Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000662A_C01 KMC000662A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181138.1| BEL1-like homeobox 1 protein (BLH1); protein id... 77 1e-13
gb|AAK43836.1|AF353094_1 BEL1-like homeodomain 1 [Arabidopsis th... 74 1e-12
gb|AAN03626.1|AF406702_1 BEL1-related homeotic protein 29 [Solan... 63 3e-09
ref|NP_612845.1| minor structural protein [Bacteriophage phi3626... 31 0.43
gb|AAN03622.1|AF406698_1 BEL1-related homeotic protein 11 [Solan... 35 0.96
>ref|NP_181138.1| BEL1-like homeobox 1 protein (BLH1); protein id: At2g35940.1,
supported by cDNA: gi_13877516, supported by cDNA:
gi_18176172, supported by cDNA: gi_20465476, supported
by cDNA: gi_20466775 [Arabidopsis thaliana]
gi|25408433|pir||H84774 probable homeodomain
transcription factor [imported] - Arabidopsis thaliana
gi|4510375|gb|AAD21463.1| putative homeodomain
transcription factor [Arabidopsis thaliana]
gi|18176173|gb|AAL59997.1| putative homeodomain
transcription factor [Arabidopsis thaliana]
gi|20465477|gb|AAM20198.1| putative homeodomain
transcription factor [Arabidopsis thaliana]
gi|20466776|gb|AAM20705.1| putative homeodomain
transcription factor [Arabidopsis thaliana]
Length = 680
Score = 77.4 bits (189), Expect = 1e-13
Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 11/80 (13%)
Frame = -2
Query: 598 PHCETISGTHHQTFIPNQH-IPIGRRLDISEPNEFG------AMNTSNSHSSAA----FE 452
PHC+++S THHQ F+ H IPIGRR+ I E E+G +T+ +HSSAA +
Sbjct: 601 PHCDSLSSTHHQGFMQTHHGIPIGRRVKIGETEEYGPATINGGSSTTTAHSSAAAAAAYN 660
Query: 451 SINMQNPKRFAAQLLPDFVA 392
+N+QN KR+ AQLLPDFVA
Sbjct: 661 GMNIQNQKRYVAQLLPDFVA 680
>gb|AAK43836.1|AF353094_1 BEL1-like homeodomain 1 [Arabidopsis thaliana]
Length = 680
Score = 73.9 bits (180), Expect = 1e-12
Identities = 39/80 (48%), Positives = 52/80 (64%), Gaps = 11/80 (13%)
Frame = -2
Query: 598 PHCETISGTHHQTFIPNQH-IPIGRRLDISEPNEFG------AMNTSNSHSSAA----FE 452
PHC+++S T HQ F+ H IPIGRR+ I E E+G +T+ +HSSAA +
Sbjct: 601 PHCDSLSSTDHQGFMQTHHGIPIGRRVKIGETEEYGPATINGGSSTTTAHSSAAAAAAYN 660
Query: 451 SINMQNPKRFAAQLLPDFVA 392
+N+QN KR+ AQLLPDFVA
Sbjct: 661 GMNIQNQKRYVAQLLPDFVA 680
>gb|AAN03626.1|AF406702_1 BEL1-related homeotic protein 29 [Solanum tuberosum]
Length = 567
Score = 62.8 bits (151), Expect = 3e-09
Identities = 42/75 (56%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Frame = -2
Query: 598 PHCETIS--GTHHQTF-IPNQHIPIGRRLDISEPN-EFGAMNTSNS-HS-SAAFESINMQ 437
PH E +S THH IP Q+I IG SEPN EFG++NT S HS S+ +E+ N+Q
Sbjct: 498 PHNENLSMSATHHSFLPIPTQNIQIG-----SEPNHEFGSLNTPTSAHSTSSVYETFNIQ 552
Query: 436 NPKRFAAQLLPDFVA 392
N KRFAA LLPDFVA
Sbjct: 553 NRKRFAAPLLPDFVA 567
>ref|NP_612845.1| minor structural protein [Bacteriophage phi3626]
gi|19908310|gb|AAL96786.1| minor structural protein
[bacteriophage phi3626]
Length = 492
Score = 30.8 bits (68), Expect(2) = 0.43
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 106 QLKLYDTNPSIQSSKLTKIIYNLNHLLSN 192
QLK+YD N I SSK+ K+I + N ++ N
Sbjct: 92 QLKIYDDNGGILSSKIFKLIVDKNLMVDN 120
Score = 23.9 bits (50), Expect(2) = 0.43
Identities = 14/32 (43%), Positives = 18/32 (55%), Gaps = 3/32 (9%)
Frame = +2
Query: 23 FFFFFKWRICKILH---RIYSLNRRYIVFFNN 109
F F + +I I H RIY+LN +Y FNN
Sbjct: 33 FKFIGENKILDISHCIVRIYALNSKYNEVFNN 64
>gb|AAN03622.1|AF406698_1 BEL1-related homeotic protein 11 [Solanum tuberosum]
Length = 535
Score = 34.7 bits (78), Expect = 0.96
Identities = 19/53 (35%), Positives = 29/53 (53%)
Frame = -2
Query: 550 NQHIPIGRRLDISEPNEFGAMNTSNSHSSAAFESINMQNPKRFAAQLLPDFVA 392
NQH IG ++P H + ++E+I+ Q+ KR+A QLL DFV+
Sbjct: 492 NQHNYIGLENHYNQPTH---------HPNISYENIDFQSGKRYATQLLQDFVS 535
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,113,377
Number of Sequences: 1393205
Number of extensions: 9684188
Number of successful extensions: 18572
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18553
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
