Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000660A_C01 KMC000660A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566688.1| expressed protein; protein id: At3g21580.1, sup... 167 1e-40
gb|AAL16220.1|AF428451_1 AT3g21580/MIL23_14 [Arabidopsis thalian... 167 1e-40
dbj|BAB02353.1| dbj|BAA18215.1~gene_id:MIL23.15~similar to unkno... 84 2e-15
ref|NP_484528.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 70 2e-11
gb|ZP_00108829.1| hypothetical protein [Nostoc punctiforme] 69 4e-11
>ref|NP_566688.1| expressed protein; protein id: At3g21580.1, supported by cDNA:
gi_16226637 [Arabidopsis thaliana]
Length = 205
Score = 167 bits (423), Expect = 1e-40
Identities = 85/123 (69%), Positives = 102/123 (82%)
Frame = -3
Query: 623 YLGVSVSEIVLSLLLSLRFISLVFDEVRNLAMGIVSRRVNWKQLTVMETIDIFFNYFRRI 444
Y+GV VSEI+L+LLLSLRFI+LVFDEVR++++GIVSRRVNW+QLTV+ET+DIF ++ RRI
Sbjct: 83 YIGVPVSEIILTLLLSLRFINLVFDEVRSVSLGIVSRRVNWQQLTVLETLDIFASFIRRI 142
Query: 443 FKNIFSHAEQISQAMIVRGFKGDVGSQKIYFLSEPSFGMADIICLLCLKIVIGAALLSEY 264
FKNIF HAEQISQAMIVRGF+G+ S KIYF S S AD +LCL VI ALLSEY
Sbjct: 143 FKNIFRHAEQISQAMIVRGFRGESSSHKIYFFSGSSNKFADFASVLCLIGVISTALLSEY 202
Query: 263 YFV 255
+ V
Sbjct: 203 FLV 205
>gb|AAL16220.1|AF428451_1 AT3g21580/MIL23_14 [Arabidopsis thaliana]
gi|26451327|dbj|BAC42764.1| unknown protein [Arabidopsis
thaliana]
Length = 391
Score = 167 bits (423), Expect = 1e-40
Identities = 85/123 (69%), Positives = 102/123 (82%)
Frame = -3
Query: 623 YLGVSVSEIVLSLLLSLRFISLVFDEVRNLAMGIVSRRVNWKQLTVMETIDIFFNYFRRI 444
Y+GV VSEI+L+LLLSLRFI+LVFDEVR++++GIVSRRVNW+QLTV+ET+DIF ++ RRI
Sbjct: 269 YIGVPVSEIILTLLLSLRFINLVFDEVRSVSLGIVSRRVNWQQLTVLETLDIFASFIRRI 328
Query: 443 FKNIFSHAEQISQAMIVRGFKGDVGSQKIYFLSEPSFGMADIICLLCLKIVIGAALLSEY 264
FKNIF HAEQISQAMIVRGF+G+ S KIYF S S AD +LCL VI ALLSEY
Sbjct: 329 FKNIFRHAEQISQAMIVRGFRGESSSHKIYFFSGSSNKFADFASVLCLIGVISTALLSEY 388
Query: 263 YFV 255
+ V
Sbjct: 389 FLV 391
>dbj|BAB02353.1| dbj|BAA18215.1~gene_id:MIL23.15~similar to unknown protein
[Arabidopsis thaliana]
Length = 295
Score = 84.0 bits (206), Expect = 2e-15
Identities = 39/51 (76%), Positives = 50/51 (97%)
Frame = -3
Query: 623 YLGVSVSEIVLSLLLSLRFISLVFDEVRNLAMGIVSRRVNWKQLTVMETID 471
Y+GV VSEI+L+LLLSLRFI+LVFDEVR++++GIVSRRVNW+QLTV+ET+D
Sbjct: 223 YIGVPVSEIILTLLLSLRFINLVFDEVRSVSLGIVSRRVNWQQLTVLETLD 273
>ref|NP_484528.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25530479|pir||AC1867
hypothetical protein alr0484 [imported] - Nostoc sp.
(strain PCC 7120) gi|17129829|dbj|BAB72442.1|
ORF_ID:alr0484~hypothetical protein [Nostoc sp. PCC
7120]
Length = 308
Score = 70.5 bits (171), Expect = 2e-11
Identities = 33/81 (40%), Positives = 53/81 (64%)
Frame = -3
Query: 626 RYLGVSVSEIVLSLLLSLRFISLVFDEVRNLAMGIVSRRVNWKQLTVMETIDIFFNYFRR 447
R + V+EI L+L LSLRFI LV +EV+NL +++R +NWK+L + + ++ R
Sbjct: 188 RRFKIPVTEITLTLTLSLRFIPLVLEEVQNLVRSVMTRAINWKKLGLKGAVKVWMIVAER 247
Query: 446 IFKNIFSHAEQISQAMIVRGF 384
+ +N+ A Q++ AM+VRGF
Sbjct: 248 LLENLLLRASQMASAMMVRGF 268
>gb|ZP_00108829.1| hypothetical protein [Nostoc punctiforme]
Length = 306
Score = 69.3 bits (168), Expect = 4e-11
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Frame = -3
Query: 626 RYLGVSVSEIVLSLLLSLRFISLVFDEVRNLAMGIVSRRVNWKQLTVMETIDIFFNYFRR 447
R + V+EI L+L LSLRFI LV +EV+NL +++R +NWK+L + ++ R
Sbjct: 186 RRFKLPVTEIALTLTLSLRFIPLVLEEVQNLFRSVMTRAINWKKLGLKGGFKVWMTVAER 245
Query: 446 IFKNIFSHAEQISQAMIVRGFKGD----VGSQKIYFLSEPSFGMADIICLLCLKIVIG 285
+ +N+ A+Q++ AM+VRGF V + F +A +I +++ IG
Sbjct: 246 LLENLLLRADQMANAMMVRGFTSPNEHRVQWHDLRFKGRDWLAIATLIVFWGIRLAIG 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,528,383
Number of Sequences: 1393205
Number of extensions: 10280297
Number of successful extensions: 27537
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 26489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27448
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
