Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000659A_C01 KMC000659A_c01
(894 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB20645.1| P0475H04.11 [Oryza sativa (japonica cultivar-gro... 102 8e-21
dbj|BAA96072.1| ribosomal protein L29 [Panax ginseng] 100 4e-20
gb|AAO23612.1| At3g06680 [Arabidopsis thaliana] 96 1e-18
ref|NP_187326.1| ribosomal protein L29, putative; protein id: At... 96 1e-18
ref|NP_187324.1| ribosomal protein L29, putative; protein id: At... 95 2e-18
>dbj|BAB20645.1| P0475H04.11 [Oryza sativa (japonica cultivar-group)]
Length = 60
Score = 102 bits (254), Expect = 8e-21
Identities = 47/59 (79%), Positives = 52/59 (87%)
Frame = -2
Query: 425 AKSKNQTAHNQSYKAHKNGNKKPKRHRYTSTKGMDPKFLKNQRYAMKHNRKGVESVAEE 249
AKSKN TAHNQSYKAHKNG KKPKRHR TSTKGMDPKFL+NQRY+ KHN+K E+ +EE
Sbjct: 2 AKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSGEAESEE 60
>dbj|BAA96072.1| ribosomal protein L29 [Panax ginseng]
Length = 61
Score = 100 bits (248), Expect = 4e-20
Identities = 45/60 (75%), Positives = 52/60 (86%)
Frame = -2
Query: 425 AKSKNQTAHNQSYKAHKNGNKKPKRHRYTSTKGMDPKFLKNQRYAMKHNRKGVESVAEEE 246
AKSKN TAHNQS+KAH+NG KKP++HR+TST+GMDPKFL+NQRYA KHN K ES EEE
Sbjct: 2 AKSKNHTAHNQSHKAHRNGIKKPRKHRHTSTRGMDPKFLRNQRYARKHNNKTGESATEEE 61
>gb|AAO23612.1| At3g06680 [Arabidopsis thaliana]
Length = 61
Score = 95.5 bits (236), Expect = 1e-18
Identities = 44/60 (73%), Positives = 50/60 (83%)
Frame = -2
Query: 425 AKSKNQTAHNQSYKAHKNGNKKPKRHRYTSTKGMDPKFLKNQRYAMKHNRKGVESVAEEE 246
AKSKN TAHNQS KAHKNG KKP+RHR+T T+GMDPKFL+NQRYA+KHN K E+ EE
Sbjct: 2 AKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAVKHNVKSGENAGVEE 61
>ref|NP_187326.1| ribosomal protein L29, putative; protein id: At3g06700.1, supported
by cDNA: 315., supported by cDNA: gi_14423481
[Arabidopsis thaliana] gi|7549643|gb|AAF63828.1|
ribosomal protein L29, putative [Arabidopsis thaliana]
gi|12321910|gb|AAG50989.1|AC036106_2 ribosomal protein
L29, putative; 3222-3503 [Arabidopsis thaliana]
gi|21592695|gb|AAM64644.1| ribosomal protein L29,
putative [Arabidopsis thaliana]
Length = 61
Score = 95.5 bits (236), Expect = 1e-18
Identities = 44/60 (73%), Positives = 50/60 (83%)
Frame = -2
Query: 425 AKSKNQTAHNQSYKAHKNGNKKPKRHRYTSTKGMDPKFLKNQRYAMKHNRKGVESVAEEE 246
AKSKN TAHNQS KAHKNG KKP+RHR+T T+GMDPKFL+NQRYA KHN K E+ + EE
Sbjct: 2 AKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAEE 61
>ref|NP_187324.1| ribosomal protein L29, putative; protein id: At3g06680.1
[Arabidopsis thaliana] gi|7549645|gb|AAF63830.1|
ribosomal protein L29, putative [Arabidopsis thaliana]
gi|12321921|gb|AAG51000.1|AC036106_13 ribosomal protein
L29, putative; 6298-6620 [Arabidopsis thaliana]
Length = 61
Score = 94.7 bits (234), Expect = 2e-18
Identities = 44/60 (73%), Positives = 49/60 (81%)
Frame = -2
Query: 425 AKSKNQTAHNQSYKAHKNGNKKPKRHRYTSTKGMDPKFLKNQRYAMKHNRKGVESVAEEE 246
AKSKN TAHNQS KAHKNG KKP+RHR+T T+GMDPKFL+NQRYA KHN K E+ EE
Sbjct: 2 AKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVEE 61
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 716,537,473
Number of Sequences: 1393205
Number of extensions: 14983720
Number of successful extensions: 45957
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 40676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44606
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48775691475
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
