Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000654A_C01 KMC000654A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 122 1e-32
pir||B86292 F7H2.12 protein - Arabidopsis thaliana gi|8927657|gb... 97 1e-23
ref|NP_173030.1| hypothetical protein; protein id: At1g15780.1 [... 97 1e-23
dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro... 93 4e-22
gb|AAG12675.1|AC027033_10 hypothetical protein; 58049-55604 [Ara... 69 2e-15
>gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]
Length = 1405
Score = 122 bits (306), Expect(2) = 1e-32
Identities = 60/69 (86%), Positives = 62/69 (88%)
Frame = -3
Query: 523 RMLVPTNYPTCSPIFLDKFPVESSMENEDLSAKAKSKFSISLRSLSQPMSLGAIARTWDV 344
R+LVPTNYP CSPI LDKFPVE S E EDLS KAKS+FSISLRSLSQPMSLG IARTWDV
Sbjct: 1314 RLLVPTNYPNCSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDV 1373
Query: 343 CARTVISEY 317
CARTVISEY
Sbjct: 1374 CARTVISEY 1382
Score = 38.9 bits (89), Expect(2) = 1e-32
Identities = 14/19 (73%), Positives = 19/19 (99%)
Frame = -2
Query: 308 RAGGGTFSSKYGTWEDCLA 252
++GGG+FSSKYGTWE+CL+
Sbjct: 1385 QSGGGSFSSKYGTWENCLS 1403
>pir||B86292 F7H2.12 protein - Arabidopsis thaliana
gi|8927657|gb|AAF82148.1|AC034256_12 EST gb|N38213 comes
from this gene. [Arabidopsis thaliana]
Length = 1366
Score = 96.7 bits (239), Expect(2) = 1e-23
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = -3
Query: 523 RMLVPTNYPTCSPIFLDKFPVESSMENEDLSAKAKSKFSISLRSLSQPMSLGAIARTWDV 344
R+LVP +YP SP LDK PVE+S ENEDLS+KA ++F+I LRSLSQPMSL IA+TWD
Sbjct: 1275 RLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAKTWDA 1334
Query: 343 CARTVISEY 317
CAR VI EY
Sbjct: 1335 CARAVICEY 1343
Score = 34.7 bits (78), Expect(2) = 1e-23
Identities = 14/17 (82%), Positives = 15/17 (87%)
Frame = -2
Query: 302 GGGTFSSKYGTWEDCLA 252
GGGTFSSKYGTWE +A
Sbjct: 1348 GGGTFSSKYGTWEKYVA 1364
>ref|NP_173030.1| hypothetical protein; protein id: At1g15780.1 [Arabidopsis thaliana]
Length = 1335
Score = 96.7 bits (239), Expect(2) = 1e-23
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = -3
Query: 523 RMLVPTNYPTCSPIFLDKFPVESSMENEDLSAKAKSKFSISLRSLSQPMSLGAIARTWDV 344
R+LVP +YP SP LDK PVE+S ENEDLS+KA ++F+I LRSLSQPMSL IA+TWD
Sbjct: 1244 RLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAKTWDA 1303
Query: 343 CARTVISEY 317
CAR VI EY
Sbjct: 1304 CARAVICEY 1312
Score = 34.7 bits (78), Expect(2) = 1e-23
Identities = 14/17 (82%), Positives = 15/17 (87%)
Frame = -2
Query: 302 GGGTFSSKYGTWEDCLA 252
GGGTFSSKYGTWE +A
Sbjct: 1317 GGGTFSSKYGTWEKYVA 1333
>dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)]
Length = 1359
Score = 93.2 bits (230), Expect(2) = 4e-22
Identities = 45/69 (65%), Positives = 54/69 (78%)
Frame = -3
Query: 523 RMLVPTNYPTCSPIFLDKFPVESSMENEDLSAKAKSKFSISLRSLSQPMSLGAIARTWDV 344
R+LVP +YP CSP+ LDKFP E ++DLS KA+SKFSI LR L++PMSL IARTWD
Sbjct: 1270 RVLVPASYPKCSPVLLDKFPDEQR-NSDDLSTKARSKFSILLRGLAEPMSLREIARTWDA 1328
Query: 343 CARTVISEY 317
CAR VI+EY
Sbjct: 1329 CARKVIAEY 1337
Score = 32.7 bits (73), Expect(2) = 4e-22
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2
Query: 308 RAGGGTFSSKYGTWEDCL 255
+ GGG+FSS YG WE+C+
Sbjct: 1340 QTGGGSFSSSYGCWENCV 1357
>gb|AAG12675.1|AC027033_10 hypothetical protein; 58049-55604 [Arabidopsis thaliana]
Length = 634
Score = 69.3 bits (168), Expect(2) = 2e-15
Identities = 33/70 (47%), Positives = 49/70 (69%), Gaps = 1/70 (1%)
Frame = -3
Query: 523 RMLVPTNYPTCSPIFLDKFPVESSMEN-EDLSAKAKSKFSISLRSLSQPMSLGAIARTWD 347
R+LVP +YP SP+ LD+ ++S+ EDLSA+ +S+FS+S+R +S+P SL IA+TW
Sbjct: 542 RLLVPLDYPYSSPMVLDEISFDTSVHKYEDLSARTRSRFSLSMREISEPGSLKEIAQTWT 601
Query: 346 VCARTVISEY 317
C R + EY
Sbjct: 602 DCVRATMVEY 611
Score = 33.9 bits (76), Expect(2) = 2e-15
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -2
Query: 308 RAGGGTFSSKYGTWEDCL 255
R GGGTFSSKYG WE L
Sbjct: 614 RHGGGTFSSKYGAWETVL 631
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,790,631
Number of Sequences: 1393205
Number of extensions: 10038593
Number of successful extensions: 23383
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23350
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
