Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000652A_C01 KMC000652A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA75593.1| MtN5 [Medicago truncatula] 115 4e-25
ref|NP_568824.1| expressed protein; protein id: At5g55450.1, sup... 91 1e-17
dbj|BAC43554.1| unknown protein [Arabidopsis thaliana] 86 3e-16
ref|NP_200357.1| unknown protein; protein id: At5g55460.1 [Arabi... 86 3e-16
ref|NP_200352.1| unknown protein; protein id: At5g55410.1 [Arabi... 85 7e-16
>emb|CAA75593.1| MtN5 [Medicago truncatula]
Length = 102
Score = 115 bits (288), Expect = 4e-25
Identities = 54/96 (56%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Frame = -1
Query: 577 KALVQWLAAALFIALLGGAQAVALCNIDTSQLK-SCRAAATGEHPPPPDKNCCDVVRQAN 401
KAL QW+ AL A+L G+ AV +CNID + LK SC TG +PP D+ CC V+R+AN
Sbjct: 7 KALAQWMIGALLFAMLAGSLAVQICNIDPNDLKQSCSKFVTGRNPPRADEACCGVLRRAN 66
Query: 400 LPCLCKYKSALPSFGINPTQALKLPSECGLSTPPEC 293
LPCLC YKSAL +GIN +AL LP +CGL TP C
Sbjct: 67 LPCLCGYKSALTYYGINAKKALALPGQCGLQTPSNC 102
>ref|NP_568824.1| expressed protein; protein id: At5g55450.1, supported by cDNA:
4309., supported by cDNA: gi_17529111, supported by
cDNA: gi_20259130 [Arabidopsis thaliana]
gi|9758177|dbj|BAB08562.1| gene_id:MTE17.16~unknown
protein [Arabidopsis thaliana]
gi|17529112|gb|AAL38766.1| unknown protein [Arabidopsis
thaliana] gi|20259131|gb|AAM14281.1| unknown protein
[Arabidopsis thaliana] gi|21593786|gb|AAM65753.1|
unknown [Arabidopsis thaliana]
Length = 104
Score = 90.5 bits (223), Expect = 1e-17
Identities = 42/91 (46%), Positives = 58/91 (63%)
Frame = -1
Query: 574 ALVQWLAAALFIALLGGAQAVALCNIDTSQLKSCRAAATGEHPPPPDKNCCDVVRQANLP 395
AL L AA+ + A ++ +CNIDT+ L CR A TG +PPPP +CC V R ANL
Sbjct: 14 ALAMVLTAAIMVK---EATSIPVCNIDTNDLAKCRPAVTGNNPPPPGPDCCAVARVANLQ 70
Query: 394 CLCKYKSALPSFGINPTQALKLPSECGLSTP 302
CLC YK LP+ GI+P++ L + CG+++P
Sbjct: 71 CLCPYKPYLPTVGIDPSRVRPLLANCGVNSP 101
>dbj|BAC43554.1| unknown protein [Arabidopsis thaliana]
Length = 109
Score = 86.3 bits (212), Expect = 3e-16
Identities = 39/97 (40%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Frame = -1
Query: 568 VQWLAAALFIA---LLGGAQAVALCNIDTSQLKSCRAAATGEHPPPPDKNCCDVVRQANL 398
V++ A A+ +A L+ ++ CNI+ + L+ CR A G++PP P K CC++++ ANL
Sbjct: 9 VKFAALAIVLAALVLMEEPTSITACNINANHLEKCRPAVIGDNPPSPIKECCELLQAANL 68
Query: 397 PCLCKYKSALPSFGINPTQALKLPSECGLST-PPECQ 290
C+C++KS LP + P++ L S+CGL+T PP CQ
Sbjct: 69 KCICRFKSVLPVLAVYPSKVQALLSKCGLTTIPPACQ 105
>ref|NP_200357.1| unknown protein; protein id: At5g55460.1 [Arabidopsis thaliana]
gi|9758178|dbj|BAB08563.1| gene_id:MTE17.17~unknown
protein [Arabidopsis thaliana]
Length = 114
Score = 86.3 bits (212), Expect = 3e-16
Identities = 39/97 (40%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Frame = -1
Query: 568 VQWLAAALFIA---LLGGAQAVALCNIDTSQLKSCRAAATGEHPPPPDKNCCDVVRQANL 398
V++ A A+ +A L+ ++ CNI+ + L+ CR A G++PP P K CC++++ ANL
Sbjct: 9 VKFAALAIVLAALVLMEEPTSITACNINANHLEKCRPAVIGDNPPSPIKECCELLQAANL 68
Query: 397 PCLCKYKSALPSFGINPTQALKLPSECGLST-PPECQ 290
C+C++KS LP + P++ L S+CGL+T PP CQ
Sbjct: 69 KCICRFKSVLPVLAVYPSKVQALLSKCGLTTIPPACQ 105
>ref|NP_200352.1| unknown protein; protein id: At5g55410.1 [Arabidopsis thaliana]
gi|9758173|dbj|BAB08558.1| gene_id:MTE17.12~unknown
protein [Arabidopsis thaliana]
Length = 110
Score = 84.7 bits (208), Expect = 7e-16
Identities = 39/100 (39%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Frame = -1
Query: 577 KALVQWLAAAL---FIALLGGAQAVALCNIDTSQLKSCRAAATGEHPPPPDKNCCDVVRQ 407
K L+Q+ A+ F ++ A ++++C++D + ++ CR A TG +PPPP +CC VVR+
Sbjct: 7 KFLMQFATFAMVLTFAMMVKEATSMSICDMDINDMQKCRPAITGNNPPPPVNDCCVVVRK 66
Query: 406 ANLPCLCKYKSALPSFGINPTQALKLPSECGLST-PPECQ 290
AN CLC++K LP I+P++ + L ++CG++T P CQ
Sbjct: 67 ANFECLCRFKFYLPILRIDPSKVVALVAKCGVTTVPRSCQ 106
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,176,733
Number of Sequences: 1393205
Number of extensions: 10841053
Number of successful extensions: 24094
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 23344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24049
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
