Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000651A_C01 KMC000651A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181191.1| hypothetical protein; protein id: At2g36500.1 [... 36 0.25
gb|AAO64148.1| unknown protein [Arabidopsis thaliana] 36 0.25
ref|NP_042286.1| polymerase [Sonchus yellow net virus] gi|401034... 34 1.2
ref|NP_295515.1| hypothetical protein [Deinococcus radiodurans] ... 32 4.7
ref|NP_703983.1| RIFIN [Plasmodium falciparum 3D7] gi|23498721|e... 32 6.1
>ref|NP_181191.1| hypothetical protein; protein id: At2g36500.1 [Arabidopsis
thaliana] gi|25408483|pir||E84781 hypothetical protein
At2g36500 [imported] - Arabidopsis thaliana
gi|4581150|gb|AAD24634.1| hypothetical protein
[Arabidopsis thaliana]
Length = 536
Score = 36.2 bits (82), Expect = 0.25
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -1
Query: 532 SGVFASAVVLTSIGILVYLKRSR 464
+GV A A+VLTSIG+ VYLKRS+
Sbjct: 513 TGVLAGAIVLTSIGLFVYLKRSK 535
>gb|AAO64148.1| unknown protein [Arabidopsis thaliana]
Length = 536
Score = 36.2 bits (82), Expect = 0.25
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -1
Query: 532 SGVFASAVVLTSIGILVYLKRSR 464
+GV A A+VLTSIG+ VYLKRS+
Sbjct: 513 TGVLAGAIVLTSIGLFVYLKRSK 535
>ref|NP_042286.1| polymerase [Sonchus yellow net virus] gi|401034|sp|P31332|RRPL_SYNV
RNA polymerase beta subunit (Large structural protein)
(L protein) gi|279540|pir||ZLVNSY genome polyprotein -
Sonchus yellow net virus (ATCC PV-263)
gi|335138|gb|AAA47896.1| ORF gi|484036|gb|AAA50385.1|
polymerase
Length = 2116
Score = 33.9 bits (76), Expect = 1.2
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 9/65 (13%)
Frame = +1
Query: 31 IEHQENHNIGPQELSHRDESRYIRG---------ITMGLQRNKRIWVTFSYYVHVQWSVA 183
+ H ++ N+ Q LS RD+ Y+ I ++RNK+I+ S Y H W
Sbjct: 424 LTHPDHFNLYSQYLSERDKIEYLANKDIAFEHSYIMRCIRRNKKIFQRSSLYNHKDWDQV 483
Query: 184 VVVET 198
V++++
Sbjct: 484 VILQS 488
>ref|NP_295515.1| hypothetical protein [Deinococcus radiodurans]
gi|7472689|pir||F75353 hypothetical protein -
Deinococcus radiodurans (strain R1)
gi|6459570|gb|AAF11349.1|AE002020_8 hypothetical protein
[Deinococcus radiodurans]
Length = 206
Score = 32.0 bits (71), Expect = 4.7
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -1
Query: 532 SGVFASAVVLTSIGILVYLKRSR 464
SGVF + V LT IG+L++LK++R
Sbjct: 161 SGVFLTVVALTGIGVLLFLKKTR 183
>ref|NP_703983.1| RIFIN [Plasmodium falciparum 3D7] gi|23498721|emb|CAD50791.1| RIFIN
[Plasmodium falciparum 3D7]
Length = 331
Score = 31.6 bits (70), Expect = 6.1
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = +3
Query: 108 YNGPSTK*THMGDIFILCACAVVSGSGCGNNSLQVAISKS*SNSSREASSIQANDYKNKE 287
++ P TK T + +I +LC C + + N+ ++V + + + + + KN++
Sbjct: 36 HHAPKTKTTKIPNIRLLCECELYAAPNYDNSEMKVVMQNFDRQTEQRFNEYEERMLKNRK 95
Query: 288 KSIQTC 305
K + C
Sbjct: 96 KCKEQC 101
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,042,083
Number of Sequences: 1393205
Number of extensions: 9719479
Number of successful extensions: 23040
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23012
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
