Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000647A_C01 KMC000647A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06789 hydroxyproline-rich glycoprotein 1 - garden pea (fra... 74 1e-12
sp|P55844|RL14_PEA PROBABLE 60 RIBOSOMAL PROTEIN L14 (HYDROXYPRO... 74 1e-12
dbj|BAA83469.1| Csf-1 [Cucumis sativus] 72 9e-12
ref|NP_179635.1| 60S ribosomal protein L14; protein id: At2g2045... 70 2e-11
ref|NP_194439.1| ribosomal protein L14 -like protein; protein id... 67 2e-10
>pir||T06789 hydroxyproline-rich glycoprotein 1 - garden pea (fragment)
gi|1711036|gb|AAB97098.1| hydroxyproline rich
glycoprotein PsHRGP1 [Pisum sativum]
Length = 264
Score = 74.3 bits (181), Expect = 1e-12
Identities = 37/45 (82%), Positives = 39/45 (86%)
Frame = -3
Query: 279 WGRKLIVKKRRPALNDFDRFKIMLTKIQRATAVRPELAKLKKSAA 145
WGRKLIVKK R ALNDFDRFKIML KI+RA VR ELAKLKK+AA
Sbjct: 220 WGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 264
>sp|P55844|RL14_PEA PROBABLE 60 RIBOSOMAL PROTEIN L14 (HYDROXYPROLINE RICH GLYCOPROTEIN
HRGP1)
Length = 133
Score = 74.3 bits (181), Expect = 1e-12
Identities = 37/45 (82%), Positives = 39/45 (86%)
Frame = -3
Query: 279 WGRKLIVKKRRPALNDFDRFKIMLTKIQRATAVRPELAKLKKSAA 145
WGRKLIVKK R ALNDFDRFKIML KI+RA VR ELAKLKK+AA
Sbjct: 89 WGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133
>dbj|BAA83469.1| Csf-1 [Cucumis sativus]
Length = 138
Score = 71.6 bits (174), Expect = 9e-12
Identities = 35/45 (77%), Positives = 39/45 (85%)
Frame = -3
Query: 279 WGRKLIVKKRRPALNDFDRFKIMLTKIQRATAVRPELAKLKKSAA 145
WGRKLIVKKRR +LNDFDRFK+ML KI+RA VR ELAKLKK+ A
Sbjct: 94 WGRKLIVKKRRASLNDFDRFKLMLAKIKRAGLVRQELAKLKKAEA 138
>ref|NP_179635.1| 60S ribosomal protein L14; protein id: At2g20450.1, supported by
cDNA: 15198., supported by cDNA: gi_20465570
[Arabidopsis thaliana] gi|25309199|pir||D84589 60S
ribosomal protein L14 [imported] - Arabidopsis thaliana
gi|4586027|gb|AAD25645.1| 60S ribosomal protein L14
[Arabidopsis thaliana] gi|17529166|gb|AAL38809.1|
putative 60S ribosomal protein L14 [Arabidopsis
thaliana] gi|20465571|gb|AAM20268.1| putative 60S
ribosomal protein L14 [Arabidopsis thaliana]
gi|21553580|gb|AAM62673.1| 60S ribosomal protein L14
[Arabidopsis thaliana]
Length = 134
Score = 70.5 bits (171), Expect = 2e-11
Identities = 35/45 (77%), Positives = 38/45 (83%)
Frame = -3
Query: 279 WGRKLIVKKRRPALNDFDRFKIMLTKIQRATAVRPELAKLKKSAA 145
WGRKLIV+KRR ALNDFDRFKIML KI+RA VR ELAKLK+ A
Sbjct: 89 WGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIA 133
>ref|NP_194439.1| ribosomal protein L14 -like protein; protein id: At4g27090.1,
supported by cDNA: gi_14190382, supported by cDNA:
gi_15215884 [Arabidopsis thaliana]
gi|7488307|pir||T06039 ribosomal protein L14 homolog
T24A18.40 - Arabidopsis thaliana
gi|4490705|emb|CAB38839.1| ribosomal protein L14-like
protein [Arabidopsis thaliana]
gi|7269562|emb|CAB79564.1| ribosomal protein L14-like
protein [Arabidopsis thaliana]
gi|14190383|gb|AAK55672.1|AF378869_1 AT4g27090/T24A18_40
[Arabidopsis thaliana] gi|15215885|gb|AAK91486.1|
AT4g27090/T24A18_40 [Arabidopsis thaliana]
Length = 134
Score = 67.4 bits (163), Expect = 2e-10
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = -3
Query: 279 WGRKLIVKKRRPALNDFDRFKIMLTKIQRATAVRPELAKLKK 154
WGRKLIV+KRR LNDFDRFKIML KI++A VR ELAKLKK
Sbjct: 89 WGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKK 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,872,949
Number of Sequences: 1393205
Number of extensions: 11158659
Number of successful extensions: 21171
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 20630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21165
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
