Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000645A_C01 KMC000645A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86175.1| putative alpha-glucosidase 1 [Oryza sativa (japo... 73 3e-12
ref|NP_065644.1| glucosidase 1; glucosidase I gene [Mus musculus... 65 1e-09
emb|CAC34725.1| alpha-glucosidase 1 [Arabidopsis thaliana] 64 1e-09
ref|NP_176916.2| glycosyl hydrolase family 63 (alpha-glucosidase... 64 1e-09
gb|AAL17718.1| alpha-glucosidase I [Arabidopsis thaliana] 64 1e-09
>dbj|BAB86175.1| putative alpha-glucosidase 1 [Oryza sativa (japonica
cultivar-group)]
Length = 889
Score = 73.2 bits (178), Expect = 3e-12
Identities = 34/49 (69%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Frame = -3
Query: 632 RNIARHYPPTGFFWEQYEQX-KGKGKGAHPFTGWTSLVVLIMAETYGTI 489
RNI ++Y TGFFWE Y+Q KGKGKGA FTGWTSLVVLIM E+Y T+
Sbjct: 839 RNIVKNYHETGFFWENYDQKNKGKGKGARSFTGWTSLVVLIMGESYPTL 887
>ref|NP_065644.1| glucosidase 1; glucosidase I gene [Mus musculus]
gi|4100636|gb|AAD00906.1| glucosidase I [Mus musculus]
Length = 834
Score = 64.7 bits (156), Expect = 1e-09
Identities = 27/45 (60%), Positives = 31/45 (68%)
Frame = -3
Query: 632 RNIARHYPPTGFFWEQYEQXKGKGKGAHPFTGWTSLVVLIMAETY 498
RN+ + Y TGF WEQY G+G G PF GWTSLV+LIMAE Y
Sbjct: 790 RNVRQQYQATGFLWEQYSDQDGRGMGCRPFQGWTSLVLLIMAEEY 834
>emb|CAC34725.1| alpha-glucosidase 1 [Arabidopsis thaliana]
Length = 852
Score = 64.3 bits (155), Expect = 1e-09
Identities = 26/45 (57%), Positives = 34/45 (74%)
Frame = -3
Query: 632 RNIARHYPPTGFFWEQYEQXKGKGKGAHPFTGWTSLVVLIMAETY 498
RN+ R+Y TG+ WEQY+Q KG GKG FTGW++L +LIM+E Y
Sbjct: 805 RNVVRNYYETGYIWEQYDQVKGTGKGTRLFTGWSALTLLIMSEDY 849
>ref|NP_176916.2| glycosyl hydrolase family 63 (alpha-glucosidase I); protein id:
At1g67490.1, supported by cDNA: gi_16506679 [Arabidopsis
thaliana]
Length = 852
Score = 64.3 bits (155), Expect = 1e-09
Identities = 26/45 (57%), Positives = 34/45 (74%)
Frame = -3
Query: 632 RNIARHYPPTGFFWEQYEQXKGKGKGAHPFTGWTSLVVLIMAETY 498
RN+ R+Y TG+ WEQY+Q KG GKG FTGW++L +LIM+E Y
Sbjct: 805 RNVVRNYYETGYIWEQYDQVKGTGKGTRLFTGWSALTLLIMSEDY 849
>gb|AAL17718.1| alpha-glucosidase I [Arabidopsis thaliana]
Length = 852
Score = 64.3 bits (155), Expect = 1e-09
Identities = 26/45 (57%), Positives = 34/45 (74%)
Frame = -3
Query: 632 RNIARHYPPTGFFWEQYEQXKGKGKGAHPFTGWTSLVVLIMAETY 498
RN+ R+Y TG+ WEQY+Q KG GKG FTGW++L +LIM+E Y
Sbjct: 805 RNVVRNYYETGYIWEQYDQVKGTGKGTRLFTGWSALTLLIMSEDY 849
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,933,783
Number of Sequences: 1393205
Number of extensions: 12339642
Number of successful extensions: 23578
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 23064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23568
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
