Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000639A_C01 KMC000639A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC11128.1| protein phosphatase [Fagus sylvatica] 106 2e-22
gb|AAM83219.1| AT4g03080/T4I9_4 [Arabidopsis thaliana] 94 9e-19
ref|NP_192217.1| putative phospho-ser/thr phosphatase; protein i... 94 9e-19
emb|CAC09573.1| protein phosphatase 1 (PP1) [Fagus sylvatica] 82 3e-15
ref|NP_172318.1| protein serine/threonine phosphatase alpha, put... 79 4e-14
>emb|CAC11128.1| protein phosphatase [Fagus sylvatica]
Length = 262
Score = 106 bits (265), Expect = 2e-22
Identities = 46/52 (88%), Positives = 50/52 (95%)
Frame = -3
Query: 559 IHPIPPPLQSPETSPERVMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 404
IHP+PPPLQSPETSPER+ ++TWMQELNIQRPPTPTRGRPQPDLDR SLAYI
Sbjct: 211 IHPLPPPLQSPETSPERIQEDTWMQELNIQRPPTPTRGRPQPDLDRSSLAYI 262
>gb|AAM83219.1| AT4g03080/T4I9_4 [Arabidopsis thaliana]
Length = 881
Score = 94.4 bits (233), Expect = 9e-19
Identities = 41/52 (78%), Positives = 44/52 (83%)
Frame = -3
Query: 559 IHPIPPPLQSPETSPERVMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 404
IHP+PPP+ SPE SPE D+ WMQELNIQRPPTPTRGRPQPD DR SLAYI
Sbjct: 830 IHPLPPPILSPENSPEHSGDDAWMQELNIQRPPTPTRGRPQPDFDRSSLAYI 881
>ref|NP_192217.1| putative phospho-ser/thr phosphatase; protein id: At4g03080.1
[Arabidopsis thaliana] gi|7488152|pir||T01385 probable
phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 -
Arabidopsis thaliana gi|3924596|gb|AAC79097.1| putative
phospho-ser/thr phosphatase [Arabidopsis thaliana]
gi|7270178|emb|CAB77793.1| putative phospho-ser/thr
phosphatase [Arabidopsis thaliana]
Length = 894
Score = 94.4 bits (233), Expect = 9e-19
Identities = 41/52 (78%), Positives = 44/52 (83%)
Frame = -3
Query: 559 IHPIPPPLQSPETSPERVMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 404
IHP+PPP+ SPE SPE D+ WMQELNIQRPPTPTRGRPQPD DR SLAYI
Sbjct: 843 IHPLPPPILSPENSPEHSGDDAWMQELNIQRPPTPTRGRPQPDFDRSSLAYI 894
>emb|CAC09573.1| protein phosphatase 1 (PP1) [Fagus sylvatica]
Length = 139
Score = 82.4 bits (202), Expect = 3e-15
Identities = 34/41 (82%), Positives = 39/41 (94%)
Frame = -3
Query: 559 IHPIPPPLQSPETSPERVMDETWMQELNIQRPPTPTRGRPQ 437
IHP+PPPLQSPETSPER+ ++TWMQELNIQRPPTPTR RP+
Sbjct: 97 IHPLPPPLQSPETSPERIQEDTWMQELNIQRPPTPTRVRPE 137
>ref|NP_172318.1| protein serine/threonine phosphatase alpha, putative; protein id:
At1g08420.1 [Arabidopsis thaliana]
Length = 1018
Score = 79.0 bits (193), Expect = 4e-14
Identities = 37/53 (69%), Positives = 43/53 (80%), Gaps = 1/53 (1%)
Frame = -3
Query: 559 IHPIPPPLQSPETSPERVMDETWMQELNIQRPPTPTRGRPQPDLDR-GSLAYI 404
IHP+PP L SPETSPER +++TWMQELN RP TPTRGRPQ DR GSLA++
Sbjct: 966 IHPLPPALSSPETSPERHIEDTWMQELNANRPATPTRGRPQNSNDRGGSLAWM 1018
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,082,497
Number of Sequences: 1393205
Number of extensions: 11125799
Number of successful extensions: 29801
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 28017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29699
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
